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Name : lysS (DVU2376) Accession : YP_011589.2 Strain : Desulfovibrio vulgaris Hildenborough Genome accession: NC_002937 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2473176 - 2474720 bp Length : 1545 bp Strand : - Note : identified by similarity to SP:P41255; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : TTGCCCACGAAGTCGGCCCACGCCGACTATTTCATGCCGATGCTCGAAAGCCTCGAAGCCCGCGACGAGCTTAACGAGGT GGTGAAGAACCGCGTCGTGAAGACGTGCGAACTTCTCGACGCCGGAGTGTCGGCCTACCCGAACGGTTTCATCAAGAAGC ACGACATCGCACCGGTACTTGCCGAGTACGAGGGGCTCGATGCTGATGAGCTCGAAACGGTGGACGCCGCCTTCACGATG GCGGGGCGCATCGTTTCGCACCGTTCGTTCGGCAAGGTGGCCTTCTTCCATATAATGGATCGCACGGGGCGCATGCAGTG CTATGCCGCGCGTGAGGAACTGGGCGAAGAAGCCTACAAGACCTTCAAGAAGCTCGACATCGGCGATATCGTCGGCGTGA GCGGAAGGCTCTTTCGCACCAAGACGGGCGAGCTCACGCTCTCCTGTACCGAGGTGCGCCTGCTGACCAAGTCCATCCGG CCCCTCCCCGAGAAGTATCACGGCCTCAAGGACGTGGAAATCCGCTATCGCCAGCGCTACGTCGACCTCATCGTCACGCC GCGGGCCCGCGACATCTTCCGCAAGCGCACGATCATCGTCCGTGAGTTCAGGCGCTTCCTCGAAGCCCGCGGTTTCATGG AAGTCGAGACGCCGATGATGCAGGCCATCCCCGGCGGCGCCACGGCAAAGCCGTTCGTCACCTTCCACAACGCGCTGGAT ATGCAGCTCTACATGCGCATCGCGCCCGAGCTCTATCTGAAACGCCTGCTCGTGGGCGGTTTCGAGAAGGTCTTCGAGAT CAACCGCAACTTCCGCAACGAGGGCATATCCACCCAGCACAACCCTGAATTCACCATGTGTGAGTTCTACTGGGCCTATG CCACGTTCGAAGACCTGATGGACCTCACCGAGGAGCTGTTCTCGCACATCGCGCGCGAGGTCTGTGGCTCTTCGGTCATC ACCTATCAGGGGCAGGAGGTCGACCTCACGCCCGGCAAGTGGGTGCGTCTGACCTTCCACGAGTCGCTTGAGAAGGTGGG TGGGCATTCCCCCGAGTTCTACAACGACTACGAGAAGGTTCGTGCCTACGTGCGTGAGCGTGGCGAGAAGGTGCTTCAGG GCGAGAAGCTGGGCAAGCTACAGGCCAAGCTGTTCGACCTCGACGTGGAACCCCGGCTCATCCAGCCCACGTTCATCTAC CACTACCCGACCGACATCTCGCCCCTGTCGCGCAGGAACGAGCAGAACCCGGACGTCACCGACCGTTTCGAACTGTTCAT CACCGGGCGCGAACTCGCCAACGCCTTCTCTGAATTGAACGACCCCGTCGACCAGCGCATGCGCTTCGAGGACCAGGTCA AGGAGAAGGAGGCTGGTGACGACGAGGCGCATTTCATGGACGAGGACTACCTGCGCGCGCTCGAATACGGTATGCCGCCC GCGGCTGGGCAGGGCGTGGGTATCGACCGCCTCGTCATGCTGCTGACCGACTCGCCCTCCATCCGCGAGGTCATCCTCTT TCCGCTGCTGAAGCCGGAGAGCTGA Protein sequence : MPTKSAHADYFMPMLESLEARDELNEVVKNRVVKTCELLDAGVSAYPNGFIKKHDIAPVLAEYEGLDADELETVDAAFTM AGRIVSHRSFGKVAFFHIMDRTGRMQCYAAREELGEEAYKTFKKLDIGDIVGVSGRLFRTKTGELTLSCTEVRLLTKSIR PLPEKYHGLKDVEIRYRQRYVDLIVTPRARDIFRKRTIIVREFRRFLEARGFMEVETPMMQAIPGGATAKPFVTFHNALD MQLYMRIAPELYLKRLLVGGFEKVFEINRNFRNEGISTQHNPEFTMCEFYWAYATFEDLMDLTEELFSHIAREVCGSSVI TYQGQEVDLTPGKWVRLTFHESLEKVGGHSPEFYNDYEKVRAYVRERGEKVLQGEKLGKLQAKLFDLDVEPRLIQPTFIY HYPTDISPLSRRNEQNPDVTDRFELFITGRELANAFSELNDPVDQRMRFEDQVKEKEAGDDEAHFMDEDYLRALEYGMPP AAGQGVGIDRLVMLLTDSPSIREVILFPLLKPES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-118 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_011589.2 | lysyl-tRNA synthetase | VFG1668 | Protein | 9e-119 | 53 |
