Gene Information

Name : DVU2029 (DVU2029)
Accession : YP_011244.1
Strain : Desulfovibrio vulgaris Hildenborough
Genome accession: NC_002937
Putative virulence/resistance : Unknown
Product : ISDvu2, transposase OrfA
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 2111440 - 2111838 bp
Length : 399 bp
Strand : +
Note : identified by match to protein family HMM PF01527

DNA sequence :
ATGTCCAGACAGAGTGCTAAAGAGATTTCCACGGTCGAGGTCGTGACCATGGTTCAACGTCGTCGTTGGACCATTGCCGA
GAAGCTACGGGTAGTTGAAGAGTCGTCTTTACCCGGAATGAGCGTCTCCTTCGTGGCTCGCAAATACGGCATCGCTCCGA
ATCTTGTCTTTCGATGGAGAAAGCTCATGAGCGATGGCGGAAAAGTGGCTATTCAGGCCGACGACCGAGTGGTGAGCGTG
GCAGAGGCGAAGGCTTTGAAGAAGCGCATTCGGGATTTGGAACGGCTTCTCGGCCGAAAGACGATGGAAGTCGAAATCCT
GAAGGAAGCTATCGACATTGCACGCGAAAAAAAACTGATCTCGCGTTCGCCGTTGCCATTCGAGGACGGTTCCCTATGA

Protein sequence :
MSRQSAKEISTVEVVTMVQRRRWTIAEKLRVVEESSLPGMSVSFVARKYGIAPNLVFRWRKLMSDGGKVAIQADDRVVSV
AEAKALKKRIRDLERLLGRKTMEVEILKEAIDIAREKKLISRSPLPFEDGSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO26_5247 YP_003232129.1 insertion sequence 2 OrfA protein Not tested LEE Protein 3e-21 46
S3188 NP_838471.2 insertion sequence 2 OrfA protein Not tested SHI-1 Protein 3e-21 46
S4060 NP_839229.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 3e-21 46
tnpG AAD44740.1 TnpG Not tested SHI-2 Protein 2e-21 46
unnamed AAL57520.1 IS2 transposase Not tested LEE Protein 2e-21 46
st02 CAC81840.1 ST02 protein Not tested LEE II Protein 2e-21 46
S4049 NP_839217.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 1e-20 45
aec50 AAW51733.1 Aec50 Not tested AGI-3 Protein 4e-21 45
SF2984 NP_708758.3 IS2 ORF1 Not tested SHI-1 Protein 4e-21 44
SF3709 NP_709448.3 IS2 ORF1 Not tested SHI-2 Protein 1e-20 43
SF3722 NP_709461.3 IS2 ORF1 Not tested SHI-2 Protein 1e-20 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DVU2029 YP_011244.1 ISDvu2, transposase OrfA VFG0648 Protein 1e-21 44
DVU2029 YP_011244.1 ISDvu2, transposase OrfA VFG0622 Protein 3e-21 43
DVU2029 YP_011244.1 ISDvu2, transposase OrfA VFG0609 Protein 3e-21 43