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Name : clpB (DVU1874) Accession : YP_011091.1 Strain : Desulfovibrio vulgaris Hildenborough Genome accession: NC_002937 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1940871 - 1943468 bp Length : 2598 bp Strand : - Note : identified by similarity to SP:Q9RA63; match to protein family HMM PF00004; match to protein family HMM PF02861 DNA sequence : ATGGATATCGGAAAGTTCACCGAGAAGTCACAGCAGGCACTGGCAGAGGCCCAGAACATCGCCGTCCGCTTCGGTCATCA GGAAGTGGATGCCGAACACCTTGCCGACGCCCTCGTCAGGCAGGAGCAGGGGCTTGTGCCCAGATTGCTCGACCGCATGG GGCAGAAGCCCGAAGCCTTTGCCGAGGCGCTCGAGCGCGAACTCGGCAAGCGTCCCGCCGTCAGCGGGCCGGGGGCGGCA CCGGGGCAGATATTCGTCTCGAAGCGACTCAACGCCGTACTGGTGAAGGCGCAGGACTTCGCGCGGCAGCTGAAGGACGA ATATGTCAGCGTAGAGCATATCTTCTGTGTGCTTCTCGAAGAACCCGCTTCCACCATCATGGGGCGCATCGCCCGCGAGT TCTCGCTCAGCCGCGAGAAGGTGCTCGGTGTGCTGGAGGATGTGCGCGGTTCGCAGCGCGTCACGTCCGCCAACCCTGAA GACACCTACGAGGCGCTTCAGAAGTATGGTCGCGACCTCGTGGAGGAGGCGCGCAAGGGCAAACTCGACCCCGTCATCGG GCGTGACGCCGAGATTCGCCGGGTCATCCGCATCCTTTCAAGGCGCACCAAGAACAACCCCGTGCTCATCGGCGAGGCTG GCGTGGGCAAGACGGCCATCGTCGAAGGTCTGGCCCACCGCATCCTCAAGGGCGACGTGCCCGAAGGCCTGAAGGAGCGT GGCCTGTTCGCGCTGGACATGGGGGCACTCATCGCCGGGGCCAAGTACCGCGGCGAATTCGAGGAACGCCTCAAGGCGGT GCTCAAGGAGGTCGAGAAGTCCGAGGGCCGCATCATCATGTTCATCGACGAGTTGCACACCATCGTCGGTGCGGGCAAGA CCGACGGCGCCATGGATGCCAGCAACCTGCTCAAGCCCATGCTGGCGCGGGGCGAGTTGCATTGCATCGGCGCGACCACC CTCGACGAATACCGCAAGTACATCGAGAAGGACCCGGCCCTTGAACGGCGCTTCCAGCCTGTGCTCGTCGACGAGCCGAC CATAGAGGACGCCATCTCCATCCTGCGTGGCCTGAAGGAGCGTTTCGAGGTGCACCACGGCGTGCGCATCAGCGACTCGG CCATCGTCGAAGCGGTGACGCTCTCGCATCGGTACATCACCGACAGGCAACTGCCGGACAAGGCCATCGACCTCATCGAC GAGGCTGCCGCCCTCATCCGTACCGAGATAGATTCGCTGCCCGCCGACCTTGACGAGGCCAACCGCAAGATCATGCAGCT TGAGATCGAGCGTGAAGCCTTGCGGCGCGAGACTGATGTCGCCTCTCGAGAACGCCTGGAACGGCTGGAGAACGAACTCG CCGACCTGCGGGCAGAGCAGACGGCCCTGCTTTCGCAATGGGAGCGCGAGAAGGGTTCCATCGACCACGTGCGGAGCATC AAGGAGGATATCGAGCGCACCCGTCACGCCATCGAGGAGGCCGAGCGCGCCTACGACCTCAACCGGGCGGCGGAGTTGAA GTATTCGCGCCTGCTCGAACTCGAGCGGCAACTCGAATCCGCCGAGAAGGGCGGGCATGACGAGACGCGGCTGCTCAAGG AGGAGGTGCGTCCCGACGACATCGCCGAAATCGTCGCGCGGTGGACGGGTATCCCGGTGACACGCCTGCTCGAATCGGAG CGCGAGAAGCTGTTGCGCCTAGCCGATGTGCTGCATGAGCGCGTGGTCGGGCAGGAAGAGGCCGTAGACGCCGTATCCGA AGCTGTGCTTCGTGCACGTGCCGGGCTCTCAGACCCTTCGCGGCCCATCGGTTCGTTCATTTTCCTTGGCCCCACGGGCG TCGGCAAGACTGAGCTTTGCAAGACCCTGGCGGAGGCCCTGTTCGATACCGAAGAGAACATCGTTCGCCTCGACATGAGC GAGTACATGGAGAAGCACGCGGTGGCGCGGCTCATCGGAGCCCCTCCCGGCTATGTGGGCTACGACGAGGGCGGGCAACT CACCGAGGCGGTGCGGCGCAAGCCCTACAGCGTGGTGCTGTTCGACGAGGTAGAGAAGGCCCACCCTGATGTGTTCAACA CCCTTCTCCAGATACTGGACGACGGGCGGCTGACAGACAGCCACGGGCGGACAGTGGACTTTCGCAACACCATCATCATC ATGACCTCGAACATCGGCTCACCCTACATGCTGGACGGCATCAGCGAAGGGGGCGAGTTCCTTTCCGGCGTTCGTGAGAA GGTGATGGAGGAGTTGCGCAGGCACTTCCGGCCCGAGTTCCTGAACCGCGTGGATGAGACCGTGCTCTTCAAGCCGTTGC TGCCCGCCCAGATAGCCCGCATCGTCGAGCTTCTTCTTGGCAGGTTGCGCGGGCGCCTTGCCGAGCGCAAGATCGACATC CGTCTCGGTGATGTGGCGCGCGACTTCATCGCCAAGGCCGCCTACGACCCCGTGTACGGTGCCCGGCCGTTGCGGCGCTA CCTGCAACACAACATCGAAACTCCCCTTGCCCGCAAGCTCATCGCCGGTGAATTGCGCGATGGCACGACGGTGGAAGTGG ACGTGGTCGATGATGCCCTGTCGTTCCGAATCGAATAA Protein sequence : MDIGKFTEKSQQALAEAQNIAVRFGHQEVDAEHLADALVRQEQGLVPRLLDRMGQKPEAFAEALERELGKRPAVSGPGAA PGQIFVSKRLNAVLVKAQDFARQLKDEYVSVEHIFCVLLEEPASTIMGRIAREFSLSREKVLGVLEDVRGSQRVTSANPE DTYEALQKYGRDLVEEARKGKLDPVIGRDAEIRRVIRILSRRTKNNPVLIGEAGVGKTAIVEGLAHRILKGDVPEGLKER GLFALDMGALIAGAKYRGEFEERLKAVLKEVEKSEGRIIMFIDELHTIVGAGKTDGAMDASNLLKPMLARGELHCIGATT LDEYRKYIEKDPALERRFQPVLVDEPTIEDAISILRGLKERFEVHHGVRISDSAIVEAVTLSHRYITDRQLPDKAIDLID EAAALIRTEIDSLPADLDEANRKIMQLEIEREALRRETDVASRERLERLENELADLRAEQTALLSQWEREKGSIDHVRSI KEDIERTRHAIEEAERAYDLNRAAELKYSRLLELERQLESAEKGGHDETRLLKEEVRPDDIAEIVARWTGIPVTRLLESE REKLLRLADVLHERVVGQEEAVDAVSEAVLRARAGLSDPSRPIGSFIFLGPTGVGKTELCKTLAEALFDTEENIVRLDMS EYMEKHAVARLIGAPPGYVGYDEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNTLLQILDDGRLTDSHGRTVDFRNTIII MTSNIGSPYMLDGISEGGEFLSGVREKVMEELRRHFRPEFLNRVDETVLFKPLLPAQIARIVELLLGRLRGRLAERKIDI RLGDVARDFIAKAAYDPVYGARPLRRYLQHNIETPLARKLIAGELRDGTTVEVDVVDDALSFRIE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-96 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_011091.1 | ATP-dependent Clp protease, ATP-binding subunit ClpB | VFG2084 | Protein | 1e-99 | 43 |
