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Name : clpC (DET0057) Accession : YP_180810.1 Strain : Dehalococcoides ethenogenes 195 Genome accession: NC_002936 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 51068 - 53542 bp Length : 2475 bp Strand : + Note : identified by similarity to SP:P37571; match to protein family HMM PF00004; match to protein family HMM PF02861 DNA sequence : ATGTCTAGCAGATTTGATAAATTTTCTGAAAGAGCGCGCCGGGTTCTTACCTATGCACAGGAGGAAGCCCAAAGCCTTAA CCATAACTATATCGGCACTGAGCATATTCTGCTGGGGCTGGTTAGGGAAGAAGAAGGCGTGGCCGCCCGCGTACTGGTGA ATATGGACGTAAACCTGGCCAAGGTACGTTCGGCTGTTGAGTTTATACTGGGGCGGGGCGAACACCCGGCCACCTCTGAA ACTGGTCTTACCTCCAGAGCCAAAAAGGTAATAGAACTGGGCATTGATGAGGCCCGGAATCTGGGTCACAACTATATCGG CACTGAACACCTGCTTTTAGGTTTACTGCGTGAAGGCGAAGGGGCGGCTGCCGGTGTCCTTGAGAGTTTCGGGGTTACTG TTGAAAAGGTACGCACCGAAGTAGGGCGTATTTTGAATCAGGGCTTAAATAAACCTAAAGCCGGCCGGGCAACTCCCAGC CGCACTCCCCAGCTTGACCAGCTGGGCTTTGACCTGACGGCCGCTGCCAGAACCGGCAAACTTGACCCGGTTATCGGGCG TGCCAAAGAAATAGAGCGGGTTGTCCAGATTCTTTCCCGCCGTACCAAAAATAACCCTGCCCTTATCGGCGAACCCGGTG TCGGCAAAACCTCCATTGTGGAGGGGCTGGCCCAGCGGATTGTTTCGGGTGACGTGCCGGAAACTCTGGAACAGAAACAT ATAATTTCGCTGGACGTGGCCTCACTGGTAGCCGGTACTAAATACCGGGGTGAATTTGAAGAACGGCTCAAGAAAGTTAT TGAAGAGATTAAAACCGCAGGTAATATAATCCTGTTTATAGACGAATTCCATACCATGGTGGGTGCCGGTGCCGCCGAGG GTGCGGTAGATGCCGCCAATATCCTCAAGCCTTCGCTGGCCAGAGGTGAGGTACAGGTAATAGGGGCAACCACCCTGGAT GACTTCCGCAAATATGTTGAGCGGGATGCCGCATTTGAGCGGCGTTTCCAGCCGGTGCTGGTGGAAGAACCGGCCATAGA AGATACCCTGAGTATACTTCGGGGCATAAAAGAGCGCTACGAAGAGCATCATAAGCTTATCATCAGCGAAGAAGCTATTG TCGCTGCCGCCAATATGGCTGCCAGATATATACCTGACCGCTTTTTGCCGGATAAGGCTATAGATTTAGTTGATGAAGCC GCTTCACGGGTGCGGATAAAGAAACGCACCAAGCCGGTCTCTTTGAAAGAGATGAAAGCCATAGAAGACAGCTACCGCCG GGATAAAGAAGCCGCTTTGGCTACCCAGCAGTATGATTATGCCTCCGAATTGCGTGAGCGTGAGCTTCAGATAGCTGAAA AGATACGCCGCATGGAAGACGAATGGCAGAACGAACAGGCCATGGATAAGCCGGTGGTGGGCGAAGAAGATATTGCCCAG GTAGTCAGCATGTGGACGGGTGTGCCGCTGGTACAGCTTACCGGTGACGAAACCGAACGTCTTTTACATATGGAAGAAGC CCTGCATGAGCGGATTATCGGCCAGGAAGAGGCCATTGTTACCATATCCAAGGCTGTCAGACGGGCACGGGCAGGTCTTA AAGATCCCCGCCATCCCATCGGCAACTTTGTCTTCCTGGGGCCCACCGGCGTAGGTAAAACCGAGCTGGCACGGGCGCTT GCCCAGTTTATGTTCGGTTCAGAAGACGCTTTAGTGCGGCTGGATATGTCCGAATTTATGGAAAAGTTTGCCGTATCCCG TCTGGTGGGTGCGCCCCCCGGATATGTGGGCTATGACGAGGGCGGCCAGTTGACTGAAGCTGTTCGCCGCAAGTCTTATT GCCTGATACTGCTGGACGAAATAGAAAAAGCTCATCCTGACGTTTTCAATATTCTTCTGCAGATATTTGATGACGGCCAC CTGACAGATACCAAGGGCAGACGGGTGGACTTTCGGAATACCATTATTATTATGACCTCAAACATCGGGGCGGAGCTTAT CCGCAAGGGCAGCGGAACTATCGGTTTTGCTACCCAGACAGATGAATCAAAGGCTCAGCAGACCAACTTTGAGCATATGA AAGACAAGCTGCTGGGTGAGCTTAAGAAGAGCTTCCGCCCGGAGTTCCTGAACCGTATTGACAGTGTGGTGGTCTTCCAC TCACTTAATAAAGAGCAGATTCGCAGTATTGTTGACCTGATGCTTAAGAGTGTTATCAAGCAGATGTCTGAAAAGGGTAT CGGGCTTGAAGTGACTGACTCTGCCAAAGACTTGCTGGGCAAGAAGGGTTATGACGAGGTTTATGGTGCAAGGCCGCTGC GCCGCACTATCCAGACCATGCTGGAGGACAGGCTGTCCGAGGACCTGCTGCGGGCTAAATTTGAAGCCGGGGATAAAGTG ATAGTGGATACTGCCGAAGACGAAATAATTGTCCGTCTGGCAGAGCCGGCCGAACTTAGCCAGGCCACTTCATAA Protein sequence : MSSRFDKFSERARRVLTYAQEEAQSLNHNYIGTEHILLGLVREEEGVAARVLVNMDVNLAKVRSAVEFILGRGEHPATSE TGLTSRAKKVIELGIDEARNLGHNYIGTEHLLLGLLREGEGAAAGVLESFGVTVEKVRTEVGRILNQGLNKPKAGRATPS RTPQLDQLGFDLTAAARTGKLDPVIGRAKEIERVVQILSRRTKNNPALIGEPGVGKTSIVEGLAQRIVSGDVPETLEQKH IISLDVASLVAGTKYRGEFEERLKKVIEEIKTAGNIILFIDEFHTMVGAGAAEGAVDAANILKPSLARGEVQVIGATTLD DFRKYVERDAAFERRFQPVLVEEPAIEDTLSILRGIKERYEEHHKLIISEEAIVAAANMAARYIPDRFLPDKAIDLVDEA ASRVRIKKRTKPVSLKEMKAIEDSYRRDKEAALATQQYDYASELRERELQIAEKIRRMEDEWQNEQAMDKPVVGEEDIAQ VVSMWTGVPLVQLTGDETERLLHMEEALHERIIGQEEAIVTISKAVRRARAGLKDPRHPIGNFVFLGPTGVGKTELARAL AQFMFGSEDALVRLDMSEFMEKFAVSRLVGAPPGYVGYDEGGQLTEAVRRKSYCLILLDEIEKAHPDVFNILLQIFDDGH LTDTKGRRVDFRNTIIIMTSNIGAELIRKGSGTIGFATQTDESKAQQTNFEHMKDKLLGELKKSFRPEFLNRIDSVVVFH SLNKEQIRSIVDLMLKSVIKQMSEKGIGLEVTDSAKDLLGKKGYDEVYGARPLRRTIQTMLEDRLSEDLLRAKFEAGDKV IVDTAEDEIIVRLAEPAELSQATS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_180810.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_180810.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0080 | Protein | 4e-148 | 50 |
