|
Name : clpB (DET1413) Accession : YP_182121.1 Strain : Dehalococcoides ethenogenes 195 Genome accession: NC_002936 Putative virulence/resistance : Virulence Product : chaperone ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1281621 - 1284059 bp Length : 2439 bp Strand : + Note : identified by similarity to SP:P37571; match to protein family HMM PF00004; match to protein family HMM PF02861 DNA sequence : GTGAGACAGGAAAAATTTACCGAACAAGCCCAGGAAGCCCTCAGTGCTTCACAGATGCTGGTGCAGGAATACCAGCACAG CCAATGGGACGTTGAACATGTGCTGCTGGCCCTTATCCGTCAGGAAAAGGGGCTGGTGGGTGAAATACTAAAAGAACTTA AAGTAAGCTCAGAGGAAATAACCAAGCAGCTGGTGGACTCTTTAAAGCGTTCGCCCAAAGCGGTAGGCGGCAATATCCAG ATATACCCCACCCCCCGTATTATAAACCTGCTGCAAACCGCCAACAACGAAGCAGAGCGCCTGCGGGACGAGTTTATCGG CACGGAACATTTGCTGGTGGCCATTGCCGGAGATACCCAGGGAGAATCTGCCCGAATTTTGAAGCAGTTTGGTATTGACC AGGAAAAAGTTTATTCCGCCCTCCAAAAAATACGGGGCGGACACAGGGTGACCGATGCCAGAGCCGAAAGCAAATACCGG GCACTGGCCAAATACAGCCGCGACCTTACCGAACTGGCCAAACAGGGCAAAATAGACCCGGTAATAGGCCGTGACCAGGA AATCCGCCGGGTTATGCAAATACTCTCCCGCCGCACCAAAAACAACCCGGTGATTGTGGGTGAAGCGGGCGTGGGCAAAA CTGCCATTGCCGAAGGGGTTGCCCAGAAAATTGCGGATAATGACGTACCCGAATCCCTGCGTGACCGCAAGGTAATGGCC CTGGATATGGGCGCTCTGGTTGCCGGAAGCAAGTTCCGCGGAGAGTTTGAAGAACGCCTCAAAGCGGTCATGGACGAGGT GCGCCAATCCGCCGGAGAGATTATCCTTTTCATAGACGAAATCCATACCGTAGTCGGGGCGGGAGCGGCTGAGGGAGCTA TAGATGCCTCAAATATGCTCAAACCGGCTTTGGCCAGAGGTGAACTTCAGACAATAGGGGCTACCACTCTGGATGACTAC CGCAAATATATTGAGAAAGATACCGCTCTGGAGCGCCGTTTCCAGCCGGTGTTTGTAGACGAGCCTACAGTTGAACAGAC TATTGAAATATTAAAGGGCATCAGACCCAAATACGAAGCCCACCATAAACTGAAAATAACTGACGCCGCTCTGGAGGCAG CCGCCAGACTGTCCAGCCGCTATATAACCGAACGCCAGCTGCCGGACAAGGCGATAGACCTTATTGACGAGGCAGCCAGT AAACTCCGGCTGGACAGCGAAAGCGCCCCGCCGGAAGTAAAAAAACTGGAAGATGAACTCCGCCAGGCAGGCATTGAGGA AGAGGCCGCCTCCCAGCTTCAGGAATACGAAAAAGCGGCTGAACTCAAGGCTGAAAAGATGCGTCTTGAGGAAAAATTCA ACACTGCCCGCGAGGATTGGCTGAAACAGGAGAAAATAGCCGAAGAAGTAACCGCCGAACAGATTACCACCTTGGTTTCG TCTATGACCGGCATACCGGTCAGCCAGATGCTGGAAGGTGAGGCTTCCAAACTGCTGAATATGGAAGACCGCATCCACGA GCGTATGGTAGACCAGGAGGAAGCGGTAAAAGCCGTAGCCGAAGCTATCCGCCGCAGCCGGGCCGGTCTTAAAGACCCGC GCCGTCCCATCGGCAGCTTTTTGTTCTTAGGCCCGACCGGGGTTGGCAAAACCGAACTTGCCCGCAGCTTAGCCTGGTTT TTGTTTGATGACGAAACCGCCATGGTCAGGCTGGACATGTCCGAATATCAGGAAAAACACACTGTTTCCCGTCTGGTAGG TGCTCCCCCCGGATACGTGGGCTACGACGAAGGCGGGCAGCTGACTGAACTGGTTCGCCGCCGCCCGTACCGGGTTATCC TGCTGGACGAAATTGAAAAAGCCCACCCGGATGTATACAACACCCTGCTCCAGCTGCTGGATGACGGCCGCCTGACAGAC GGGCAGGGCAGAACGGTGGACTTTAAAAACACGGTTATCATTATGACCTCCAACGCAGGCATAGAAACTATCAAACGCGA ATCTGCCCTGGGTTTTGCCGTCAGGACTGATGACTCCAAAACCCGCCATGACGGCTATGAACGCATGAAAGACAAGGTCA TGGCCGAGGTTAAAAAGACCTTCCGCCCGGAGTTTATCAACCGGGTAGACGAAATAATTGTCTTCCATGAGCTGGCCGAA GAACAGATACGCCAGATAGTGGATTTCATAATAAAAGATGTTTCCAAACGGCTTGAAGAACGCAAACTCAAGCTGGAGCT GACCGATGCCGCCAAAGGCTGGCTGGCCAAGGTGGGTTATGACCCGGCCTTTGGTGCCAGACCCCTTCGCAGGGCCATTG AAAGATACATAGAAAGCCCGCTGGCTGACAAGCTGCTTCGCAATGAGTTCAGCGAAAATGCTACAATACTGGTGGACAAG GCGGATGAAGCCCTGAGTTTCAGCCAGAAGGCCGCCTGA Protein sequence : MRQEKFTEQAQEALSASQMLVQEYQHSQWDVEHVLLALIRQEKGLVGEILKELKVSSEEITKQLVDSLKRSPKAVGGNIQ IYPTPRIINLLQTANNEAERLRDEFIGTEHLLVAIAGDTQGESARILKQFGIDQEKVYSALQKIRGGHRVTDARAESKYR ALAKYSRDLTELAKQGKIDPVIGRDQEIRRVMQILSRRTKNNPVIVGEAGVGKTAIAEGVAQKIADNDVPESLRDRKVMA LDMGALVAGSKFRGEFEERLKAVMDEVRQSAGEIILFIDEIHTVVGAGAAEGAIDASNMLKPALARGELQTIGATTLDDY RKYIEKDTALERRFQPVFVDEPTVEQTIEILKGIRPKYEAHHKLKITDAALEAAARLSSRYITERQLPDKAIDLIDEAAS KLRLDSESAPPEVKKLEDELRQAGIEEEAASQLQEYEKAAELKAEKMRLEEKFNTAREDWLKQEKIAEEVTAEQITTLVS SMTGIPVSQMLEGEASKLLNMEDRIHERMVDQEEAVKAVAEAIRRSRAGLKDPRRPIGSFLFLGPTGVGKTELARSLAWF LFDDETAMVRLDMSEYQEKHTVSRLVGAPPGYVGYDEGGQLTELVRRRPYRVILLDEIEKAHPDVYNTLLQLLDDGRLTD GQGRTVDFKNTVIIMTSNAGIETIKRESALGFAVRTDDSKTRHDGYERMKDKVMAEVKKTFRPEFINRVDEIIVFHELAE EQIRQIVDFIIKDVSKRLEERKLKLELTDAAKGWLAKVGYDPAFGARPLRRAIERYIESPLADKLLRNEFSENATILVDK ADEALSFSQKAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_182121.1 | chaperone ClpB | VFG0079 | Protein | 0.0 | 55 |
| clpB | YP_182121.1 | chaperone ClpB | VFG0080 | Protein | 1e-144 | 48 |
