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Name : lysS (DIP1987) Accession : NP_940318.1 Strain : Corynebacterium diphtheriae NCTC13129 Genome accession: NC_002935 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2035873 - 2037435 bp Length : 1563 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGAGTAACGCTAAAAACACCCAAGACGTACCTGAGCAGCTCCGCATTCGTCGCGAGAAGCGCCAGAAGCTTATCGACGC CGGCGTGGAGCCGTATCCAGTCATCGTTGACCGCACCCACTCGATCACCGAGCTGCGCGAGAAGTTTGCAGCTGTGCCAG AGGGTGAAAAGGGCGACAAGCCAGGCGTTACCTACCTCGAACCAGGCGAGGATTCCGGCGTAGAGGTTGCCATCACCGGC CGCGCCCTGTTTATCCGCAACACCGGCAAGCTGTGCTTCGCTGCTCTCCAAGAGGGCAACGGCGAGTACATGCAGGCTAT GTTGTCCTTGGCTGAGGTTGGCGAGGAATCCTTGGCATCGTGGAAGGCCGATGTTGACCTAGGCGACATCGTTTCCATCC GCGGTACCGTCGTCGCTTCCAAGCGTGGCGAGCTTTCTGTGATGGTGAACTCGTGGCACATGGCGTCGAAATCGCTACGC CCACTGCCTGTGGCCTTCGCTGATATGAGCGAGGACATGCGTATCCGCCACCGTTACACCGACTTGATTATGCGTGAACA GGCTCGTACCAACGCTATGACTCGTATTAAGGTCATGCGCGCGCTACGCCATTACCTTGAAGGCCAGGACTTCATGGAAG TTGAAACCCCCATGCTGCAAACCCTGCACGGCGGCGCAGCGGCACGTCCGTTTGTTACGCACTCCAACGCCCTTGATATC GACCTCTACCTGCGTATCGCGCCAGAACTTTACCTCAAGCGCTGCGTGGTTGGTGGTATCGAGCGTGTATTCGAGGTTAA CCGCAACTTCCGCAACGAGGGCGTGGACTCCTCGCACTCCCCAGAGTTCGCCATGCTGGAAACCTACCAAGCGTGGGGCA CCTACGATGACGGCGCGAAGATGATCCAAGAGCTCATCCAGTCCGTCGCAATGGAAGTCTTTGGCTCCACCACCGTCACG CTTGTCGACGGCACCGAGTACGACCTCGGCGGCGAATGGAAGACCATCGAGATGTACCCATCACTCAACGAGGCGTTGAC ACGCAAGTTCCCAGGCCAGCCAGAGGTCACCATCGACTCCACCGTGGATGAACTCAAAGCAATCGCCGCTGTTATCGGTT TGGACGTTCCAGCCAAGGGCGGTTGGGGCCACGGCAAGCTGGTCGAAGAGATCTGGGAGCACCTGTGCGAAGACCAGCTC TACGGCCCAATCTTCGTTCGTGACTTCCCAGTGGAAACCTCGCCGCTGACTCGCCAGCACCGCTCCAAGCCAGGTGTTAC CGAAAAGTGGGACCTCTACGTGCGCGGTTTCGAACTAGCAACCGGCTACTCCGAGCTTGTCGACCCCGTCATCCAGCGCG AGCGCTTCGAGGACCAAGCTCGTCTTGCCGCCGGTGGCGACGATGAGGCCATGGTCTTGGACGAGGACTTCCTCGCAGCT ATGGAGCAGGGCATGCCACCAACGGCAGGCTGCGGCATGGGCATTGACCGCCTCCTGATGGCCCTGACCGGCCTTGGCAT CCGCGAGACAGTACTGTTCCCAATCGTGAAGCCGGAGCGCTAA Protein sequence : MSNAKNTQDVPEQLRIRREKRQKLIDAGVEPYPVIVDRTHSITELREKFAAVPEGEKGDKPGVTYLEPGEDSGVEVAITG RALFIRNTGKLCFAALQEGNGEYMQAMLSLAEVGEESLASWKADVDLGDIVSIRGTVVASKRGELSVMVNSWHMASKSLR PLPVAFADMSEDMRIRHRYTDLIMREQARTNAMTRIKVMRALRHYLEGQDFMEVETPMLQTLHGGAAARPFVTHSNALDI DLYLRIAPELYLKRCVVGGIERVFEVNRNFRNEGVDSSHSPEFAMLETYQAWGTYDDGAKMIQELIQSVAMEVFGSTTVT LVDGTEYDLGGEWKTIEMYPSLNEALTRKFPGQPEVTIDSTVDELKAIAAVIGLDVPAKGGWGHGKLVEEIWEHLCEDQL YGPIFVRDFPVETSPLTRQHRSKPGVTEKWDLYVRGFELATGYSELVDPVIQRERFEDQARLAAGGDDEAMVLDEDFLAA MEQGMPPTAGCGMGIDRLLMALTGLGIRETVLFPIVKPER |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 0.0 | 99 |
