Gene Information

Name : CT0953 (CT0953)
Accession : NP_661846.1
Strain : Chlorobium tepidum TLS
Genome accession: NC_002932
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 899717 - 900442 bp
Length : 726 bp
Strand : +
Note : identified by match to PFAM protein family HMM PF00005

DNA sequence :
GTGTCGATGATGGATCAAGTGGGTCAAACCGTTCTCTCCGTCGATGGGGTGTCGAAAAGTTACCTGATGGGCGAGGTGAC
CGTGAAGGCTTTGCACGACATTTCGCTCGACTTCGGGGCGGGCCAGCTGGTGGTGCTGCTCGGCGCTTCCGGCAGCGGCA
AATCGACGCTGCTCAACATCGTCGGCGGCCTCGATGTGCCTGATTCCGGCACGGTATCGTTCAAGGGCCAGGACATTAAC
GCCAAGGGCGAGGCTGGCCTGACGGCGTTTCGTCGCCGCTCCATCGGCTTCGTGTTCCAGTTTTACAACCTCATCGCAAG
CCTCTCGGCGCTCGAAAACGTGCAGCTCGTTACGGAGCTGGTCGAAAATCCCATGCCGCCCGAGGAGGCGTTGCGGCTGG
TCGGCCTCGGTGACCGCATCAACCATTTCCCTTCGCAGCTTTCGGGTGGCGAACAGCAGCGCGTCGCCATCGCCCGCGCC
GTCGCCAAGCGTCCGGAGCTGCTGCTCTGCGACGAACCCACCGGCGCGCTCGACTACCGCACCGGCAAGCTGGTGCTCGA
AGTGATCGAAAAAGTCAATCGGGAACTCGGTACCACCACGCTGGTCATCACGCACAACGTCTCGATCTCCGGCATGGCCG
ACCGCATCATCACGTTACGAAGTGGCGAAGTGGTCGAAGATCGGCGGAATGAGAAGAAGATTTCGCCATCGGAGTTGTCG
TGGTGA

Protein sequence :
MSMMDQVGQTVLSVDGVSKSYLMGEVTVKALHDISLDFGAGQLVVLLGASGSGKSTLLNIVGGLDVPDSGTVSFKGQDIN
AKGEAGLTAFRRRSIGFVFQFYNLIASLSALENVQLVTELVENPMPPEEALRLVGLGDRINHFPSQLSGGEQQRVAIARA
VAKRPELLLCDEPTGALDYRTGKLVLEVIEKVNRELGTTTLVITHNVSISGMADRIITLRSGEVVEDRRNEKKISPSELS
W

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 9e-29 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-33 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CT0953 NP_661846.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 2e-52 50
CT0953 NP_661846.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 8e-39 46
CT0953 NP_661846.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-30 42
CT0953 NP_661846.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-35 41