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Name : hsdM-1 (CT0675) Accession : NP_661571.1 Strain : Chlorobium tepidum TLS Genome accession: NC_002932 Putative virulence/resistance : Unknown Product : type I restriction system adenine methylase Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : - Position : 666360 - 667955 bp Length : 1596 bp Strand : + Note : identified by match to PFAM protein family HMM PF02384 DNA sequence : ATGGCAAGATCTGATAGTGACAAGAACGGCAATGGGGGCAACCTCGGCTTCGAGGCTGAACTGTTCAAAGCCGCCGACAA GCTGCGCGGCAACATGGAGCCCAGCGACTACAAGCACGTCGCGCTGGGTTTGATCTTCCTGAAGTACATCTCCGACGCCT TCGAGGCCAAGCACAAGGCGCTGCTGGCCGAAGATGCACTGGCCGCCGAGGACAAGGACGAATACCTCGCCGACAACGTG TTCTGGGTGCCAAAGGAGGCGCGCTGGTCGCACCTGCAAGCCAACGCCAAGCAGCCCACCATCGGCACCCTGATCGACGA CGCGATGCGCGCCATCGAGAAGGACAACGCATCGCTCAAGGGCGTGCTGCCCAAGGATTACGCCCGCCCTGCGCTCAACA AGGTGATGCTGGGGGAACTCATCGACCTGATCTCCGGCATTGGCCATCTGCTCCCCTCGCCCTCCGGGAGAGGGGCCGGG GGTGAGGGGCAATCCTTCGACATCCTCGGGCGCGTCTATGAGTACTTCCTCGGCCAGTTCGCCGGGGCCGAAGGCAAACG CGGCGGCGAGTTCTACACCCCGCGTTCCGTGGTGCGCGTGCTGGTGGAAATGCTGGAGCCGTACTCCGGCCGCGTGTACG ACCCCTGCTGCGGTTCAGGCGGGATGTTTGTCCAGTCCGAGAAGTTCGTGCAGGAGCACGGCGGCCGTATTGGCGACATC GCCATCTACGGCCAGGAATCGAACTACACCGCCTGGCGGCTGGCCAAAATGAACCTGGCCGTGCGCGGCATCGACGCCGA CATCCGCTGGAACAACGAAGGTAGCTTCCACAAGGACGAACTGCGCGACCTCAAGGCCGACTACATCCTGGCCAACCCGC CCTTCAACATCTCCGACTGGGGTGGCGATCGCCTGCGTGAAGACGTGCGCTGGCAGTTCGGCGTACCGCCCGTGGGCAAC GCCAACTACGCCTGGCTCCAGCACATCTACTGGCACCTGGCCCCCAACGGCACGGCGGGCGTGGTGCTGGCCAACGGCTC CATGAGCTCCAACCAGTCGGGCGAGGGCGAGATTCGCCGCGCCATGCTCGAAGCCGACGCGGTGGATTGCATGGTGGCGC TGCCCGGGCAGCTCTTTTACTCCACGCAAATCCCCGCCTGCCTGTGGTTTCTGGCCCGCAACAAAAACCCCGCGAATGGC AAAACCGGGGGGCTGCGCGACCGGCGCGGGCACGTGCTGTTCATCGACGCCCGCAAGATGGGCGTGCTGGTGGACCGCAC CCGGCGCGAACTCAGCGACGAGGAGATCCAGAAAATCGCCCGCACCTACCACGCCTGGCGCGGCGAACCCGACGCGGGCG ACTACGCCGACGTGGCGGGCTTCTGCAAATCCGCCACGCTGGACGAAATCCGCAAACACGGCCACGTGCTGACGCCCGGC CGTTACGTGGGCGCAGCGGAAGTGGAAGACGACGGCGAACCCTTCGAGGAGAAGATGGCGCGGCTGGCGGCGCAGTGGCG GCAGCAGCGGGACGAGGCGGCGAAGCTCGATGCGGCGATTGAGGCGAACCTCAAAGAACTGGGTTTCTGGGAGTGA Protein sequence : MARSDSDKNGNGGNLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHKALLAEDALAAEDKDEYLADNV FWVPKEARWSHLQANAKQPTIGTLIDDAMRAIEKDNASLKGVLPKDYARPALNKVMLGELIDLISGIGHLLPSPSGRGAG GEGQSFDILGRVYEYFLGQFAGAEGKRGGEFYTPRSVVRVLVEMLEPYSGRVYDPCCGSGGMFVQSEKFVQEHGGRIGDI AIYGQESNYTAWRLAKMNLAVRGIDADIRWNNEGSFHKDELRDLKADYILANPPFNISDWGGDRLREDVRWQFGVPPVGN ANYAWLQHIYWHLAPNGTAGVVLANGSMSSNQSGEGEIRRAMLEADAVDCMVALPGQLFYSTQIPACLWFLARNKNPANG KTGGLRDRRGHVLFIDARKMGVLVDRTRRELSDEEIQKIARTYHAWRGEPDAGDYADVAGFCKSATLDEIRKHGHVLTPG RYVGAAEVEDDGEPFEEKMARLAAQWRQQRDEAAKLDAAIEANLKELGFWE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 2e-147 | 60 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 1e-147 | 59 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 1e-147 | 58 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 3e-109 | 50 |
