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Name : clpC (CT0191) Accession : NP_661097.1 Strain : Chlorobium tepidum TLS Genome accession: NC_002932 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 199397 - 201961 bp Length : 2565 bp Strand : + Note : identified by match to PFAM protein family HMM PF00004 DNA sequence : ATGGAAGGAAATTTCTCGAATAGAGTTCAGGACGTGATCAGGCTCAGCCGCGAAGAGGCGCTGCGTCTGGGGCACGACTA TATCGGCACCGAACATCTTCTGCTCGGACTGATCCGGGAAGGAGAGGGCATAGGAGCCAAAATTCTCAAAAACCTCAAAG TCGATCTTTTCCAGCTGAAGCAAAAGATCGAGGAGAACACCCATCCCAAGGTTCCGGCCACGCAGATGGGCAATGTGCCG CTAACCAAGCAGGCTGAAAAGGTGCTCAAGATCACTTATTTGGAGGCCAAGATCTGCAAGTCAACCATCATCGGCACGGA GCATCTGTTGCTCTCGATTCTCAAGGGTGACGACAACATTGCCGCCCAGATTCTCGAACAGTTCGGTGTCACCTATGACC AGGTGCGCGACGAGCTGATGACCATTACGACCGGGCGCAGCGAGGCTTACGAGCCGCCGATGGAGGGTTCCTATTCGTCG GGTTCGGGAAGCCCCGCGCGTCCGTCGAAAAAGTCCGAGACGAAGCGCGGTGAACGCACCAAAACGCCGGTGCTCGACAA TTTCGGGCGCGACATCACGCGCTTGGCGATGGAGGACAAGCTCGACCCGATCATCGGGCGCGAAAAGGAGATCGAGCGCG TGGCGCAGGTGCTCAGCCGCCGCAAGAAAAACAATCCGGTGCTGATCGGCGAGCCTGGCGTTGGCAAAACGGCCATCGCC GAAGGGCTGGCGCTCAAGATCGTGCAGCGCAAGGTTTCGCGCGTGCTTTACGACAAGCGCGTCGTGGCGCTCGACCTCGC GGCGCTCGTCGCGGGCACGAAGTACCGCGGCCAGTTTGAGGAGCGCATGAAGGCGCTCATGAATGAGCTGGAGCGTTCGC GTGACGTGATCCTCTTCATCGACGAGCTGCACACCATCATCGGTGCTGGCGGCGCTTCGGGTTCGCTCGATGCGAGCAAC ATCTTCAAACCCGCGCTCGCTCGCGGCGAGTTGCAGTGCATCGGCGCGACCACGCTCGATGAGTACCGCCAGTACATCGA GAAGGATGGTGCGCTGGATCGCCGTTTCCAAAAGATCATGGTTGAGCCGACCTCGGTCGAGGAGACCATCCAGATTCTGA ACAACATCAAAAACAAGTACGAAGCGCATCACCACGTGCATTACTCGGAGGATGCCATCGAGAAGGCGGTCAAGCTCTCG GAGCGCTACATCACCGACCGTTTTCTGCCTGACAAGGCGATCGACGTCATGGACGAGGCGGGCGCGAGAGTGCACCTGAG CAACATCCACGTGCCGCAGGAGATTCTCGAACTTGAGAAGTCCATCGAGGAGATCAAGAGCGAGAAGAACAAAGTGGTCA AGATGCAGAACTTCGAGGAGGCGGCACGCCTGCGCGACAAGGAGAAGAACATGCTTGAAGCGCTCGACCACGCCAAGCAG GAGTGGGAAGAGCAGTCGATGGAGAGCGTTTACGACGTGACCGAAGCCGACATCACCTCGGTGATCGCGATGATGACCGG CATTCCGGTGGCGAAGGTGGCGCAGTCCGAATCGAAGAAGTTGCTCACCATGGAGGCGGAGCTGAAAAAGGAAGTCATCG GCCAGGACGAGGCGATCAAGAAGATCACCAAAGCGATCCAGCGCACCCGTGCGGGCCTCAAGGATCCGTCGCGCCCCATC GGCTCGTTCATCTTCCTCGGCCCGACCGGCGTCGGCAAGACCGAGCTGGCCAAGGCGCTGACCCGTTATCTGTTCGACAG CGAGGATGCGCTGATCCGCGCCGACATGAGTGAGTACATGGAGAAGTTCTCGGTAAGCCGCCTGGTTGGAGCGCCTCCCG GATACGTTGGCTACGAAGAGGGCGGCCAGCTCACCGAAAAGGTGCGCCGCAAACCCTATTCGGTGGTGCTGATCGACGAG ATCGAAAAGGCGCATCCCGACGTGTTTAACATTCTGCTCCAGGTGCTCGACGAGGGCGTGCTGACCGACGGACTTGGCCG CAAGGTCGATTTCCGCAACACGATCATCATCATGACCTCGAACATCGGTGCCAAGGAGATCAAGAGCTTCAGCACCGGCG GAGGCATGGGCTTCGCGCCGCCTTCGGATGCGACGGGTGATTACAAGGCGATGAAGTCCACCATCGAGGATGCATTGAAG CGCGTGTTCAATCCGGAGTTCCTGAACCGCATCGACGACACGATCGTGTTCCACCAGCTCGAAAAGTCGGATATCTTCAA GATTATCGACATCACGGCAGGCAAGCTCTTCAAGCGCCTGAAGGAGATGGGCATCGAGGTTGAGATCGACGAGAAAGCCA AGGAGTTCCTTGTCGAGAAGGGTTACGACCAGAAGTACGGAGCACGCCCGCTGAAACGCGCGTTGCAGAAATATGTCGAG GATCCGCTCGCGGAGGAGATGCTCAAGGGCCGCTTCACCGAGGGCAGCGTGATTCAGATCACCTTCGACGAAAAGGAGAA GGAGCTGCGCTTTCTTGATGGCGCGTCTTCCGCCGAACCGACTCCCAAAAAGAGCAAGAAAGAGGAGACGCTCGACAAAG AGTGA Protein sequence : MEGNFSNRVQDVIRLSREEALRLGHDYIGTEHLLLGLIREGEGIGAKILKNLKVDLFQLKQKIEENTHPKVPATQMGNVP LTKQAEKVLKITYLEAKICKSTIIGTEHLLLSILKGDDNIAAQILEQFGVTYDQVRDELMTITTGRSEAYEPPMEGSYSS GSGSPARPSKKSETKRGERTKTPVLDNFGRDITRLAMEDKLDPIIGREKEIERVAQVLSRRKKNNPVLIGEPGVGKTAIA EGLALKIVQRKVSRVLYDKRVVALDLAALVAGTKYRGQFEERMKALMNELERSRDVILFIDELHTIIGAGGASGSLDASN IFKPALARGELQCIGATTLDEYRQYIEKDGALDRRFQKIMVEPTSVEETIQILNNIKNKYEAHHHVHYSEDAIEKAVKLS ERYITDRFLPDKAIDVMDEAGARVHLSNIHVPQEILELEKSIEEIKSEKNKVVKMQNFEEAARLRDKEKNMLEALDHAKQ EWEEQSMESVYDVTEADITSVIAMMTGIPVAKVAQSESKKLLTMEAELKKEVIGQDEAIKKITKAIQRTRAGLKDPSRPI GSFIFLGPTGVGKTELAKALTRYLFDSEDALIRADMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLIDE IEKAHPDVFNILLQVLDEGVLTDGLGRKVDFRNTIIIMTSNIGAKEIKSFSTGGGMGFAPPSDATGDYKAMKSTIEDALK RVFNPEFLNRIDDTIVFHQLEKSDIFKIIDITAGKLFKRLKEMGIEVEIDEKAKEFLVEKGYDQKYGARPLKRALQKYVE DPLAEEMLKGRFTEGSVIQITFDEKEKELRFLDGASSAEPTPKKSKKEETLDKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | NP_661097.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 54 |
| clpC | NP_661097.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0080 | Protein | 6e-145 | 49 |
