|
Name : wbpO (BP3150) Accession : NP_881715.1 Strain : Bordetella pertussis Tohama I Genome accession: NC_002929 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 3360205 - 3361479 bp Length : 1275 bp Strand : - Note : Similar to Salmonella typhi Vi polysaccharide biosynthesis protein VipA or TviB or Sty4661 SW:VIPA_SALTI (Q04972) (425 aa) fasta scores: E(): 1.1e-118, 68.72% id in 422 aa, and to Pseudomonas aeruginosa WbpO TR:Q9RHD7 (EMBL:AF035937) (422 aa) fasta scores DNA sequence : TTGCGCATTGATGATGTGAAACTGGCCGTTGTCGGCCTCGGATACGTGGGGCTGCCGCTGGCCGTGGAGTTCGGCAAGAA ACGCCCGGTGATCGGCTTCGATATCAACGAGCGCCGCATCGCCGCGCTCAAGGCCGGCCACGATCACACCCTGGAAGTCG AGGACGACGAACTGGCCCGGGCCGCGCAGCTCAGCTACACCGCCGAGCGCGAGGAACTGGGCAAGGCCAATGTGTTCATC GTCACCGTGCCCACGCCGATCGACGAGTACAAGCAGCCCGACCTCACGCCGCTGGTCAAGGCCAGCGAGACCATCGGCGC GGTGCTCAAGCGCGGCGACATCGTGATCTACGAATCGACCGTGTACCCGGGCGCCACCGAGGAAGACTGCGTGCCGGTGC TCGAGCGCGTGTCGGGCCTGAAGTTCAACCAGGACTTCTACGCCGGCTACAGCCCCGAGCGCATCAACCCGGGCGACAAG GCGCACCGCGTCAACACCATCAAGAAGGTGACCTCGGGCTCGACGCCGGAAGTCGCCGAGCTGGTCGACCAGCTGTACAA CGAGATCATCACGGCCGGCACCCACAAGGCCTCGAGCATCCGCGTGGCCGAGGCCGCCAAGGTGATCGAGAACACGCAGC GCGACGTCAACATCGCGCTGATCAACGAGCTGGCGCTGATCTTCAACAAGATGGGCATCGACACCGAGGCCGTGCTGCAG GCCGCCGGCACCAAGTGGAACTTCCTGCCGTTCCGTCCGGGCCTGGTGGGCGGGCACTGCATCGGCGTGGATCCGTACTA CCTGACGCACAAGGCGCAGGCCATCGGCTACCACCCTGAGATCATCCTGGCGGGCCGCCGCCTGAACGACTCGATGGGCG GCTACGTGGTCTCGCAGCTGGTCAAGGCCATGGCCAAGCGCCGCATCCACGTCGAGGGCGCGCGCGTGCTGCTGATGGGC CTGACGTTCAAGGAAAACTGCCCCGACCTGCGCAACACGCGCGTGGTGGACATCGTGCGCGAGCTGGGCGAGTACCACGT CGACGTGGACGTGTACGACCCGTGGGTGGACCCGGCCGAGGCCGAGCACGAGTACGGCATCACGCCGGTCGCCAAGCCGG CCGCCGGGGCGTACGACGCGATCATCCTGGCGGTGTCGCACCACCAGTTCGTCGAGATGGGCGCCGAGGCGATCCGCAAG TTCGGCAAGGCCGAGCACATCCTGTACGACCTGAAGTACGTGCTGGCCCCCGAGCAGGCCGACCTGAGGCTGTAA Protein sequence : MRIDDVKLAVVGLGYVGLPLAVEFGKKRPVIGFDINERRIAALKAGHDHTLEVEDDELARAAQLSYTAEREELGKANVFI VTVPTPIDEYKQPDLTPLVKASETIGAVLKRGDIVIYESTVYPGATEEDCVPVLERVSGLKFNQDFYAGYSPERINPGDK AHRVNTIKKVTSGSTPEVAELVDQLYNEIITAGTHKASSIRVAEAAKVIENTQRDVNIALINELALIFNKMGIDTEAVLQ AAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQAIGYHPEIILAGRRLNDSMGGYVVSQLVKAMAKRRIHVEGARVLLMG LTFKENCPDLRNTRVVDIVRELGEYHVDVDVYDPWVDPAEAEHEYGITPVAKPAAGAYDAIILAVSHHQFVEMGAEAIRK FGKAEHILYDLKYVLAPEQADLRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 9e-145 | 69 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 9e-145 | 69 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-112 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| wbpO | NP_881715.1 | polysaccharide biosynthesis protein | VFG0431 | Protein | 4e-145 | 69 |
