|
Name : kdpB (BP2481) Accession : NP_881108.1 Strain : Bordetella pertussis Tohama I Genome accession: NC_002929 Putative virulence/resistance : Unknown Product : potassium-transporting ATPase subunit B Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2216 EC number : 3.6.3.12 Position : 2626526 - 2628691 bp Length : 2166 bp Strand : + Note : Similar to Escherichia coli potassium-transporting ATPase B chain KdpB or b0697 SW:ATKB_ECOLI (P03960) (682 aa) fasta scores: E(): 5.4e-136, 66.71% id in 694 aa, and to Escherichia coli O157:H7 high-affinity potassium-transporting ATPase B chain Ecs0725 T DNA sequence : ATGGCCAACTCCCCTACCCCCCTGTCCGCCCAGGCCGGCCTGCCGGCTGCAAGCCCCTCCCTGCCGGCGGCCACGCCGCA TCGCGCGTTCGGCCTGTGGTCGCGCGCGCTGGCCGGCCCCGCCCTGCGCGACACCCTGCGCAAACTGTCGCCGGCCGCCC AGTTGCGCAACCCCGTCATGTTCGTCGTCTACGCCGGCAGCATCCTGACCACCCTGTTGTGGCTGCTGGCCCTGGCCGGC CTGGCCGAGGCCCCCGCGGGCTTCATCCTCGCCGTCGCGGCCGGCCTCTGGTTCACCGTGCTGTTCGCCAACTTCGCCGA GGCATTGGCCGAGGGGCGCGGCAGGCAGCAGGCCGCCGCCCTGCGCGGCTTGCGCACCACCATCGAGGCGCGGGTGCTGA CAGGCTTTCGCGATAGCGACGCCGCCGCAGCACTGCCGCCGTACTGGCGCTCGCGCGCCACCTCGCGCCCCTCGGGCGCG CTGCGCAGGGACGACGTGGTCCTGATCGAAGCGGGCGAAACCGTGCCGGGCGACGGGCAGGTGATCGCCGGCATCGCCTC GGTCGACAAAAGCGCCATCACCGGCGAATCGGCGCCGGTGATCCGCGCGGCCGGCAGCGATTTCTGCTCGGTCACCGGCG GCACGCGCGTCCTGTCCGACTGGATCTTCGTGCGCATCGCGGCCGACCCTGGCGACAGCTTCCTCGACCGCATGATCGCC ATGGTGGAAAGCGCCCGCCGCCAGAAAACCCCCAATGAGCTGGCGCTGACCATCCTGCTGGTGGGCCTGACGCTGGTGTT CCTGCTGGTCGTGGCCAGTCTGCTGCCGTTCTCGATGTACGCGGTGTCCGCCTCGGGCGCGGGGCAGGCTGTGTCGATCA CCGTGCTGGTGGCCCTGCTGGTCTGCCTGATCCCCACCACCATCGGCGGCCTGCTGTCGGCCATCGGCGTGGCGGGCATG AGCCGCATGATGCGGGCCAACGTCATCGCCACCTCGGGGCGCGCGATCGAGGCGGCCGGCGATGTCAGCGTCCTGCTGCT GGACAAGACCGGCACGATCACGTTTGGTAATCGCCAGGCCGCGGCCTTCGTCCCCGCGCCGGGCGTATCCCCGGCGGTGC TGGCCGAGGCCGCGCGGCTGGCGTCGCTGGCCGACGAAACGCCCGAGGGCCGCAGCATCGTCGCCCTGGCCGAGCGCATC CTGGACACCCGCAGCGAGGCGCCCGCCGGCGCGCGCTTCGTGCCGTTCTCCGCCCAGTCGCGCATGAGCGGCGTGGACCT CGACGGCCGCCTTATCCGCAAGGGAGCGGCCGACGCCCTGGCACGCTGGCTGGGCGAAGGACAGGGCGGCCTGCCCGCCG CCGTGGCGCGCGACGTGGACGACGTGGCGCGCCGCGGCAGCACGCCCCTGGTGGTCGCCGAAGGCGGGCAGGCGCTGGGC GTGATCGAGCTCAAGGACATCGTCAAGCCCGGGATCCAGCCGCGCTTTGCCGCGTTGCGCCGCATGGGCATCAAGACGGT CATGATCACCGGCGACAACGCCCTGACCGCGGCCGCCATCGCCGCCGAGGCCGGCGTGGACGACTTCCTGGCCGAAGCCA CCCCGCAAGCCAAGCTGGAACTGATCCGCGCCTGCCAGGCCGACGGCCATCTGGTGGCCATGACGGGCGACGGCACCAAC GATGCGCCGGCGCTGGCCCAGGCCGACGTGGCGGTCGCCATGAACTCCGGCACGCAGGCCGCCAAGGAGGCCGGCAACAT GGTGGACCTGGACTCCAACCCCACCAAGCTGATCGAAATCGTCGAAATCGGCAAGCAGATGCTGATGACGCGCGGCGCGC TCACCACCTTCAGCGTCGCCAACGACGTCGCCAAGTATTTCGCCATTATTCCCGCGGCATTCATGGCGGTGTACCCGCAG CTGGCGCAACTCAATGTGATGGGCCTGGCCACCCCCGCCTCGGCCATTCTTTCGGCCGTCATTTTCAACGCCCTGATCAT CGTGGCCCTGATTCCGCTGGCGCTCAAGGGCGTGCGCTACCGCCCGCTCGGCGCGGCGGTGCTGCTGCGCCGCAACCTGC TGGTCTATGGACTGGGCGGGCTGCTGGCGCCCTTTGCCGGCATCAAACTGATCGACATGGCGCTGGCCGCCCTGGGCTGG ACCTGA Protein sequence : MANSPTPLSAQAGLPAASPSLPAATPHRAFGLWSRALAGPALRDTLRKLSPAAQLRNPVMFVVYAGSILTTLLWLLALAG LAEAPAGFILAVAAGLWFTVLFANFAEALAEGRGRQQAAALRGLRTTIEARVLTGFRDSDAAAALPPYWRSRATSRPSGA LRRDDVVLIEAGETVPGDGQVIAGIASVDKSAITGESAPVIRAAGSDFCSVTGGTRVLSDWIFVRIAADPGDSFLDRMIA MVESARRQKTPNELALTILLVGLTLVFLLVVASLLPFSMYAVSASGAGQAVSITVLVALLVCLIPTTIGGLLSAIGVAGM SRMMRANVIATSGRAIEAAGDVSVLLLDKTGTITFGNRQAAAFVPAPGVSPAVLAEAARLASLADETPEGRSIVALAERI LDTRSEAPAGARFVPFSAQSRMSGVDLDGRLIRKGAADALARWLGEGQGGLPAAVARDVDDVARRGSTPLVVAEGGQALG VIELKDIVKPGIQPRFAALRRMGIKTVMITGDNALTAAAIAAEAGVDDFLAEATPQAKLELIRACQADGHLVAMTGDGTN DAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQMLMTRGALTTFSVANDVAKYFAIIPAAFMAVYPQ LAQLNVMGLATPASAILSAVIFNALIIVALIPLALKGVRYRPLGAAVLLRRNLLVYGLGGLLAPFAGIKLIDMALAALGW T |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kdpB | NP_814334.1 | potassium-transporting ATPase subunit B | Not tested | Not named | Protein | 8e-148 | 58 |
| ef0088 | AAM75291.1 | EF0088 | Not tested | Not named | Protein | 6e-148 | 58 |
| kdpB | BAA82181.1 | potassium-transporting ATPase(B chanin) | Not tested | Type-II SCCmec | Protein | 5e-127 | 52 |
| SAR0071 | YP_039539.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 7e-127 | 52 |
| kdpB(SCCmec) | NP_370597.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 7e-127 | 52 |
| kdpB | NP_373310.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 7e-127 | 52 |
| kdpB | YP_190029.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 7e-127 | 52 |
| kdpB | YP_251949.1 | potassium-transporting ATPase subunit B | Not tested | SCCmec | Protein | 1e-127 | 52 |
