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Name : BP2470 (BP2470) Accession : NP_881097.1 Strain : Bordetella pertussis Tohama I Genome accession: NC_002929 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 2612694 - 2614049 bp Length : 1356 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTAGATCCGATACTGCTGCGCAAAGACCTGCAAACCGTCGTCGACCGCCTCAAGAGCCGTGGCGTCGATTTCGACAT CGCCCGGTTCAACGAGCTGGAGTCCCGCCGCAAGGCCGTCCAGACCGAAACCGAGTCGCAGCAGGCGCGCCGCAATGCCT TGGCCAAGCAGATCGGCCAGCTCAAGGGCAAAGGCGCACCCGAAGCGGAAGTGCAGGCCGTGATGGCCGAGTCGCAGGCC TTGCCGGCCCGGCTCAAGGCGCTCGAGGACGAACTGGCGCAGACGCAGGCGCAACTCAACGACCTGCTGATGTCCGTGCC CAACCTGCCGCACGCCAGCGTGCCGCAGGGCGCGTCCAGCGACGAGAACGTCGAGGTGCGGCGTTGGCTGCCGGGCGCGG CCGACGAGCGCGGCATCCCTGCGGCGCTGGGTTTCGAGGTGCGGGATCACGTGGCGGTGGGCGAGCCGCTGGGCCTGGAT TTCGATCTGGCCGCACGGCTGTCGGGCGCGCGCTTTTCTTTCATGCGCGGCCAGATGGCGCGCCTGCACCGCGCGCTGGC GCAGTTCATGCTGGACTTGCAGACGGGCACGCATGGCTACACCGAGTGCTACACGCCCTACATCGTCAACAGCTCGACCT TGTTCGGCACCGGCCAACTGCCCAAGTTCAAGGACGACATGTTCTTCGTCACCAAGGGCGGCGGCGACGACGAGCCCAAG GTCGACGAGCAGGGCAACCCGCTGGCGCGCGAAGACCAATACCTGATCTCGACCTCGGAAATCACCCTGACCAGCGTGGT GCGCGAGACCATCGTGGCCGGCGCCGACCTGCCGCTGCGCCTGACCGCGCATACGCCGTGCTTCCGCTCCGAAGCCGGCA GCGGCGGGCGCGATACGCGCGGCATGATCCGCCAGCACCAGTTCGACAAGGTCGAGATGGTGCAGATCGCCCATCCCGAG CATTCGTACGAGGCGCTCGAGGAAATGGTCGGCCATGCCGAGCGCGTACTGCAGCTGCTGGAGCTGCCGTACCGCGTCAT GCTGCTGTGCACCGGCGACATGGGTTTCGGCTCGGCCAAGACCTACGACCTGGAGGTCTGGCTGCCGGCGCAGGATACCT GGCGCGAGATCTCCTCGGTTTCCAACTGCGAAACATTCCAGGCGCGCCGCATGCAGGCCCGCTTCCGTAACGCGCAGAAC AAGCCCGAATACGTGCATACGCTCAATGGGTCCGGGCTGGCCGTGGGCCGCGCCCTGGTGGCCGTGCTGGAAAACTGCCA GCAAGCCGACGGCAGCGTGCGGGTGCCGGCCGTGCTGCAGCCCTACATGGGCGGCCTGACCGTTCTCGAACCTTGA Protein sequence : MLDPILLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGKGAPEAEVQAVMAESQA LPARLKALEDELAQTQAQLNDLLMSVPNLPHASVPQGASSDENVEVRRWLPGAADERGIPAALGFEVRDHVAVGEPLGLD FDLAARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYTPYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPK VDEQGNPLAREDQYLISTSEITLTSVVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQIAHPE HSYEALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCETFQARRMQARFRNAQN KPEYVHTLNGSGLAVGRALVAVLENCQQADGSVRVPAVLQPYMGGLTVLEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 5e-97 | 50 |
