|
Name : BP2296 (BP2296) Accession : NP_880934.1 Strain : Bordetella pertussis Tohama I Genome accession: NC_002929 Putative virulence/resistance : Unknown Product : ABC transporter ATP binding protein Function : - COG functional category : R : General function prediction only COG ID : COG1123 EC number : - Position : 2418864 - 2420501 bp Length : 1638 bp Strand : + Note : Similar to many eg. Agrobacterium tumefaciens Agr_l_3504p TR:AAK90329 (EMBL:AE008378) (575 aa) fasta scores: E(): 2.8e-114, 60.74% id in 535 aa, and to Rhizobium meliloti oligopeptide ABC transporter ATP-binding protein Smb20111 TR:CAC48511 (EMBL:AL603642 DNA sequence : ATGACCATGAACGACCAAGAGACCCTGCTTTCGGTACGCGACCTGACCATTGCGCTGCCGCGCGGCGGCGACCGCGAATA CGCCGTGCGCGATGTGTCCTACGACATCCGCGTCGGGGAGATCCTGTGCATCGTCGGCGAGTCCGGCTCGGGCAAGTCGA TGAGCGCCAACGCCATCATGGGCCTGCTGCCCGACTACCTCCAGCCGCAGGGCGGCCAGATCCTGTTCCGCGGCAAGGAC CTGCTGCGGCAGGACGAGGCCACCCTGCTGTCGATGCGCGGCAAGGACATGGCCATGATCTTCCAGGAGCCGCTGTCGGC CCTCAATCCGCTGATGACCGTGGGCGAGCAGATCGGCGAAGTCATGCGCGTGCACGACGCCTACCCCGGTCCGCAACGCC AGCGCCGCGTGCTCGAGCTGCTGGCGTTCGTCGGCCTGCCCGACCCGGCCGTCCTGTGCGACGTGTACCCATTCCGCCTG TCCGGCGGCCAGCGCCAGCGCGTGATGATCGCCATGGCCCTGGCGCTCGAGCCGGCCCTGCTGATCGCCGATGAGCCGAC CACCGCCCTGGATGTCACCACCCAGGCGCAGATCCTCGCCCTGATCGCCCGGATCCAGAAGGAAAAGGGCATGGGCGTGA TGTTCGTCACGCACGACTTCGGCGTGGTGGCCGAGATCGCCCATCGGGTGGCGGTGATGGAACAAGGCATCCTGGTCGAG CAAGGTCCGGCCGAGGAAGTCCTCAACCGCCCGCAACACCCGTATACGCGCCGCCTGATCGCCGCCGTCCCGCACCGGCG CGCCGACGCCCGCCCCCCGGTGGCGCAGGACGCGCCGGTACTGGCGGTCGACAAGCTGTGCAAGACCTATGTCACCGGCC ATGGCTGGTTCGGCAAGAAGCGGGTGGTGCGCGCGGTCGACGAGGTCAGCTTCGAGGTGCGCCGCGGCGAAACGCTGGGC ATCGTCGGCGAATCCGGTTCGGGCAAGTCCACCATCGGCAAATGCCTGCTCAAGCTGATCGGCATCGACGGCGGCAAGCT GGTGTTCAACGGGCGCGATATCGCCGGATTGTCCGAAAGCCAGTTCCGGCCGCTGCGCAAGGACATCCAGATGATTTTCC AGGATCCGTTCGCCTCGCTCAACCCGCGCCAGACCGTGGGCCGCATCATCAGCGACGGCCCGGTCGCCAACGGCAAGACG CGCGCCCAGGCCGAAGCCCGCGCGCGCGAACTGCTGACCCTGGTGGGGCTCGATCCCTCGGCCTTCGACCGCTATCCCAA CCAGTTCTCCGGCGGCCAGCGCCAGCGCATCGGCATCGCGCGCGCCCTGGCGCTGGAGCCGCAGGTGCTGGTGGCCGACG AGTCGGTTTCGGCGCTGGACGTGTCGGTGCAGGCGCAGGTGCTGCAGCTGCTGCACGAATTGCAGCAGCGCCTGCGCATC GCGCTGATCTTCATCACCCACGATCTGCGCGTGGCGGCGCAGATCTGCAATGCCGTGCTGGTCATGCACCGCGGCAAGGT GGTGGAGTACGGCACCCCCGCGCAGATTTTCGACCAGCCGCAGAACCCTTATACGCAGCAGTTGATCGCCGCCGTTCCCG GCCAGCACTGGGACCCGACCAAGGCGCAGACCGCCTAG Protein sequence : MTMNDQETLLSVRDLTIALPRGGDREYAVRDVSYDIRVGEILCIVGESGSGKSMSANAIMGLLPDYLQPQGGQILFRGKD LLRQDEATLLSMRGKDMAMIFQEPLSALNPLMTVGEQIGEVMRVHDAYPGPQRQRRVLELLAFVGLPDPAVLCDVYPFRL SGGQRQRVMIAMALALEPALLIADEPTTALDVTTQAQILALIARIQKEKGMGVMFVTHDFGVVAEIAHRVAVMEQGILVE QGPAEEVLNRPQHPYTRRLIAAVPHRRADARPPVAQDAPVLAVDKLCKTYVTGHGWFGKKRVVRAVDEVSFEVRRGETLG IVGESGSGKSTIGKCLLKLIGIDGGKLVFNGRDIAGLSESQFRPLRKDIQMIFQDPFASLNPRQTVGRIISDGPVANGKT RAQAEARARELLTLVGLDPSAFDRYPNQFSGGQRQRIGIARALALEPQVLVADESVSALDVSVQAQVLQLLHELQQRLRI ALIFITHDLRVAAQICNAVLVMHRGKVVEYGTPAQIFDQPQNPYTQQLIAAVPGQHWDPTKAQTA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 3e-85 | 44 |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 7e-75 | 43 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 7e-75 | 43 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 7e-75 | 43 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 7e-75 | 43 |
