Gene Information

Name : bscR (BP2240)
Accession : NP_880884.1
Strain : Bordetella pertussis Tohama I
Genome accession: NC_002929
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 2368034 - 2368705 bp
Length : 672 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGAGCGATACCGACCCCTTCAGCCTGGCCCTGTTTCTGGCGCTGCTGGCGCTGGTACCGCTCATCGTCGTCATGACCAC
GTCGTTCCTGAAGATCGCCGTCGTGCTTGCCTTGGTGCGCAACGCCCTGGGAGTGCAACAGGTACCGCCCAACATGGCCC
TGTACGGGCTGGCGCTTATTCTTTCCGCGTATGTGATGGCGCCGGTCGTTCACAGGATAGGCACCGAGGTCCAGGCCTTG
ACCGCGCAAGCCGGGGAGTCCGGCACCGCCGCGCCGATGGCGCTGGACGCCGTGCTTGGCGTGGCCGAGCGAGGCGTGGG
GCCGCTGCGGGCCTTCATGTTGCGCAACAGCCAGCCGGCCCAGCGTGATTTCTTCCTGCGCACAGCGCGTCATCTCTGGG
GCGAGGAGGCATCGCGGGACCTGTCGGAAGACAACCTGCTGGTATTGACGCCCGCATTTCTGGTTTCGGAGCTGACCGCC
GCATTCCAGCTTGGCTTTCTGCTGTACCTGCCGTTCATCATCATCGACCTCATCGTATCGAACATTCTTCTTGCCATGGG
AATGATGATGGTTTCTCCCGTGACGATCTCCATGCCGTTGAAGCTGTTCCTGTTCGTCATGGTGGACGGCTGGACGCGCC
TGATCCAGGGCCTGGTGCTTTCCTATCGGTGA

Protein sequence : 
MSDTDPFSLALFLALLALVPLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQAL
TAQAGESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSEDNLLVLTPAFLVSELTA
AFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFLFVMVDGWTRLIQGLVLSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-50 58
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-44 52
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-44 52
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-44 52
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-44 51
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-38 50
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-38 50
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-41 50
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-37 50
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-37 50
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-36 49
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-36 49
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-43 49
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-43 49
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-44 48
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-44 48
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-44 48
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-44 48
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 9e-42 48
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-44 47
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-40 47
escR AAC38369.1 EscR Virulence LEE Protein 2e-39 47
escR AAC31528.1 L0049 Virulence LEE Protein 2e-40 47
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-40 47
escR AAK26700.1 EscR Virulence LEE Protein 2e-40 47
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-40 47
escR AAL57527.1 EscR Virulence LEE Protein 2e-40 47
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 3e-40 47
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-40 47
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 3e-40 47
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-40 47
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-40 47
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-44 47
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-39 46
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-39 45
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-38 45
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-39 45
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-39 45
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-38 45
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-37 45
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-37 45
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 6e-37 42
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 6e-35 42
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-26 41
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-26 41
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 3e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
bscR NP_880884.1 type III secretion system protein VFG0044 Protein 3e-91 100
bscR NP_880884.1 type III secretion system protein VFG0188 Protein 2e-48 54
bscR NP_880884.1 type III secretion system protein VFG0394 Protein 3e-48 53
bscR NP_880884.1 type III secretion system protein VFG0827 Protein 1e-40 47
bscR NP_880884.1 type III secretion system protein VFG0715 Protein 1e-39 47
bscR NP_880884.1 type III secretion system protein VFG0519 Protein 2e-39 45
bscR NP_880884.1 type III secretion system protein VFG1773 Protein 2e-35 44
bscR NP_880884.1 type III secretion system protein VFG2016 Protein 2e-32 42
bscR NP_880884.1 type III secretion system protein VFG1259 Protein 4e-33 42
bscR NP_880884.1 type III secretion system protein VFG0551 Protein 8e-27 41
bscR NP_880884.1 type III secretion system protein VFG2338 Protein 5e-30 41