Name : gabD (BP1976) Accession : NP_880652.1 Strain : Bordetella pertussis Tohama I Genome accession: NC_002929 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 2083103 - 2084572 bp Length : 1470 bp Strand : - Note : Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or B2661 SW:GABD_ECOLI (P25526) (482 aa) fasta scores: E(): 7e-125, 66.66% id in 480 aa, and to Alcaligenes eutrophus succinate semialdehyde dehydrogenase GabD TR:Q9RBF6 (EMBL:A DNA sequence : ATGACGCAGTTGACCCAACCCCTGAGCCGCGCCGAACTGCTGCGCGACGCCTGCTACATCGACGGCAAGTGGGTAGGCGC CGGCAACGGCCCGTCCATCCCGGTCGATAACCCGTCCACCGGCAAGACCATCATCTCGGTGCCCAAGCTGGGCCGCAAGG AAGCCGAGCAGGCCATCGACGCCGCCGAGGCCGCCCTGCCCGCCTGGAGCGCCAGGACCGGCAAGGAGCGCGCCGCGATC CTGCTGAAGTGGGCCCAGCTGATGATGGAGAACCAGCAGGACCTGGCCGTCATCATGACGTCCGAGCAAGGCAAGCCCGT GCCCGAGGCCGCCGGCGAGATCGCCTACGCCGCGTCCTTCCTGGAGTGGTTCGCCGAAGAAGCCAAGCGCATCGACGGCG ACATCCTGCAAAGCCCCAAGGGCGGCCAGCGCCTGATGGTGCTCAAGCAGCCCATCGGCGTGACCGCCGCCATCACGCCG TGGAACTTCCCGGCCGCCATGATCACCCGCAAGGTCGGCCCGGCCCTGGCCGCCGGCTGCACCATGGTGGTCAAGCCGGC CCAGCAGACGCCGCTGACCGCGCTCGCGCTGGCCGTGCTGGCCGTGCTGGCCGGCGTGCCGGCCGGCGTGTTCCAGGTCG TGACCGGCAGCTCGCGTGAAATCGGCGCGGCCCTGTGCGAAAGCGAAGTGGTGCGCAAGCTGAGCTTCACCGGCTCGACC GAAGTCGGCCGCACGCTCATGGAGCAATGCGCGCCCACCATCAAGAAACTGTCGCTGGAACTGGGCGGCAACGCGCCGTT CATCGTGTTCGACGACGCCGACCTGGATCGCGCCATCGACGGCATTCTGGCCTCCAAGTACCGCAACGCCGGCCAGACCT GCGTATGCGCCAACCGCATCTACGTGCAGGCCGGCGTCTACGAGGAAGTGGCCAAGCGCCTGGTCGAGAAGGTCAACGCC ATGAAGGTGGGCGACGGCTTCGAACAGGGCGTCACCCAGGGCCCGCTGATCGACACCGCCGCCGTGGCCAAGGTGCAGGA ACACATCGCCGACGCCACCGCGCACGGCGCCAAGGTCATCGCCGGCGGCGAGCCGCATGCGCTGGGCGGCAGCTTCTTCC AGCCCACGGTGGTGCGCGACGTCACGCAGTCGATGCGCTTTGCCGTCGAGGAAACCTTCGGCCCGGTCGCCCCGCTGTTC AAGTTCGACAGCGAAGACGAAGTCATCGGCATGGCCAACAACACCATCTTCGGCCTGGCCGCCTACTTCTACACGCGCGA CTACGCCCGGATCTGGCGCGTCTCCGAAGCGCTGGAATACGGCATCGTCGGCATCAACACCGGCATCATCTCCAATGAAG TCGGCCCGTTCGGCGGCGTCAAGCAATCCGGCCTGGGCCGCGAAGGCTCGAAGTACGGGATCGAGGACTACCTCGAGCTG AAATACCTCTGCGTGGACCTGGGCGCCTGA Protein sequence : MTQLTQPLSRAELLRDACYIDGKWVGAGNGPSIPVDNPSTGKTIISVPKLGRKEAEQAIDAAEAALPAWSARTGKERAAI LLKWAQLMMENQQDLAVIMTSEQGKPVPEAAGEIAYAASFLEWFAEEAKRIDGDILQSPKGGQRLMVLKQPIGVTAAITP WNFPAAMITRKVGPALAAGCTMVVKPAQQTPLTALALAVLAVLAGVPAGVFQVVTGSSREIGAALCESEVVRKLSFTGST EVGRTLMEQCAPTIKKLSLELGGNAPFIVFDDADLDRAIDGILASKYRNAGQTCVCANRIYVQAGVYEEVAKRLVEKVNA MKVGDGFEQGVTQGPLIDTAAVAKVQEHIADATAHGAKVIAGGEPHALGGSFFQPTVVRDVTQSMRFAVEETFGPVAPLF KFDSEDEVIGMANNTIFGLAAYFYTRDYARIWRVSEALEYGIVGINTGIISNEVGPFGGVKQSGLGREGSKYGIEDYLEL KYLCVDLGA |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 6e-137 | 64 |
cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 3e-72 | 41 |