Gene Information

Name : fimB (BP1881)
Accession : NP_880572.1
Strain : Bordetella pertussis Tohama I
Genome accession: NC_002929
Putative virulence/resistance : Virulence
Product : chaperone protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 1980316 - 1981050 bp
Length : 735 bp
Strand : +
Note : Previously sequenced as Bordetella pertussis chaperone protein fimb/fhad precursor fimb or fhaD SW:FIMB_BORPE (P33409) (244 aa) fasta scores: E(): 2.6e-99, 99.59% id in 244 aa

DNA sequence : 
ATGGCGCGCTGGCGCCGGCGGCTGGGCGTCGCGGCGCTGGGCGCCGCCATGCTGGCGAGCCTGGCGCCGGCCGCCCGGGC
CAGCCTCGTCATCACGGGTACGCGCGTGATCTACAACGCGGGCTCGCCCGAGACCACGGTGAAGATGAGCAACGAGGGGC
AGGCCCCCGCGCTGATGCAGGCATGGATCGATGACGGCAATGCCGAGGCGAAGCCGGACGAAGTCCAGGTGCCGTTCTTC
CTGACGCCTCCGCTGGCGCGGGTGGACCCGGGCAAGGGGCAGACCTTGCGCATTTTCTTCAATGGCTACCCGGATGGCAA
GACGCTGCCGTCCGACCGCGAATCGGTCTTCTGGCTGAACGTTCTCGAAGTGCCGCCCAAGGCGACGCCCGAGGAAGGCC
ACGGGGTCCTGCAGCTGACCATCCGCTCGCGCCTGAAGCTGTTCTATCGGCCCAAGGGCCTGTCCGGCAACCCGCTGACG
GCCGCCGCCGACCTGACCTTCAAGCGCAAGCCCAACGGCGTGCTGGAGGTGCACAACCCGACGCCGTACTACGTGAACCT
GCAAAAGCTGGAGGTGGGCGAGAACGGCGCGCACGGCAGCAAGACGCCGTGGATGCTGGCGCCGCTTTCCTCGGACGAGC
TGCGCCTGAAAGGGACGGGGGCCAAGTCGGTGCAGTACTGGGCCATCGACGACTTCGGCGGCGTGACGCCATATCAGGCG
GCCATAGCGGACTGA

Protein sequence : 
MARWRRRLGVAALGAAMLASLAPAARASLVITGTRVIYNAGSPETTVKMSNEGQAPALMQAWIDDGNAEAKPDEVQVPFF
LTPPLARVDPGKGQTLRIFFNGYPDGKTLPSDRESVFWLNVLEVPPKATPEEGHGVLQLTIRSRLKLFYRPKGLSGNPLT
AAADLTFKRKPNGVLEVHNPTPYYVNLQKLEVGENGAHGSKTPWMLAPLSSDELRLKGTGAKSVQYWAIDDFGGVTPYQA
AIAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ecpD1 AAO49832.1 pilin chaperone ecpD1 Not tested SPI-3 Protein 1e-39 43
unnamed CAD33727.1 putative F17-like fimbrial chaperone Virulence PAI I 536 Protein 1e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimB NP_880572.1 chaperone protein VFG0007 Protein 2e-98 100
fimB NP_880572.1 chaperone protein VFG1145 Protein 3e-35 46
fimB NP_880572.1 chaperone protein VFG1468 Protein 7e-32 41