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Name : wcbA (BP1631) Accession : NP_880359.1 Strain : Bordetella pertussis Tohama I Genome accession: NC_002929 Putative virulence/resistance : Virulence Product : capsular polysaccharide export protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3563 EC number : - Position : 1715348 - 1717405 bp Length : 2058 bp Strand : + Note : Similar to Escherichia coli capsule polysaccharide export protein KpsC SW:KSC5_ECOLI (P42217) (675 aa) fasta scores: E(): 1.9e-87, 42.81% id in 689 aa, and to Pasteurella multocida LipA TR:Q9L9L5 (EMBL:AF169324) (682 aa) fasta scores: E(): 1.5e-98, 42.28% DNA sequence : ATGATCGAGCTTCATTCGTCAGGCATCGCGCGTATTCCGTACCTGACGGAGCTGCTGGGCGCGCCGGTCACCCGCTACCG GCGCTTCTGGCCGCCGGGCGGCGCGGCGCCGCGCGCGGTGGCGGGATGGGGCGCGCGCCCCAGCGCCGCGCCGGCGCGGC GCCGCGCCCGTTCGCTGGGCGTGCCCTACATTGCGCTGGAAGACGGTTTCCTGCGCTCGTTCGGCACCGGGCGCCATTTT CCGCCTCTGTCGCTGGTGGTCGATCGCCTGGGCATCTACTACGACGCGACGCGCGAATCCGAGCTGGAGTGCCTGCTGGC GTCGTCGCGCACGCTGCTCGACGGCATCGAGGACGCCGTGCCCGAAGCCATGGAGCTGGTGCGCGAACGCCGCCTGTCGA AGTACAACCAGGGCTGCTTCCTGGCCACCGGCGTGCCGGCCGACGGCCGGCGCCGGGTGCTGGTGGTGGACCAGACCGAA GGCGACATGAGCGTGACCCTGGGTTGCGCCGAGGCGGCCACCTTCGAGGCCATGCTGGCGGCGGCGCGGGCGGAGAGCCC TGGCGCGCTGATCTGCGTCAAGACGCATCCCGAGGTGGCGGCCGGCGACAAGTCGGGCTATCTGTCGCGGGTTACCGACG ACGCCGATACGGTGGCGCTGCGCCACGACATGAATCCCCTGGCCTTGCTGGAACAGATGGACCGGGTCTATGTGGTCAGT TCGCAGATGGGGTTCGAAGCCCTGATGCTGGACAAGCCCGTGACCTGCTTCGGCATGCCCTGGTATGCCGGCTGGGGCGT GACCGACGATCGCCAGCGCTGCGAGCGGCGCGGCCGCGCGCGCAGCGTCGAGGAGCTGTTCGCCGGCGCGTATTTCCACT ACACCCGCTACCTGGATCCGGTGCTGCATCGCCGCGGCACGATCTTCGACGTGATCGACTGGCTGACGCGCCAGCGCGAC ATGGCGCAACGCCTGCCGTCGCGCGTGATCGGCGTGGGCATGCGCCGCTGGAAGGCGGCCGCGCTGGCGCCCATGCTGGC GTTAAAGCCCGGCCAGGCGGTGTTCGCCGCCGACGCCGCCCGCGCGCGGGACCTGGGGCAGGCCGCGGGCGACGCCCTGG TGCATTGGGGCGCCCGGGCGCCCGCCGGCGTGGCCGAGCTGGCCGAACAGAGCGGTTGCGCGGTGCTGGCCGTGGAGGAT GGCTTCCTGCGGTCGGTCGGCCTGGGGTCGGACCTGATCCGGCCGCTGAGCCTGGCGCTGGACGGGCGGGGCATCTACTT CGATCCCCGCCAGCCCAGCGATCTGGAGCATGAATTGAACCGGGGCGGGTTCAGCCCGGGAGAGCTGGCCAGTGCGGCGC GCATCCGCGCGCTGGTGGTCGCCCACGGCATCACCAAGTACAACGTGGCGCAGCCCCAGCCGGCCGACTGGCCGGCGCGC GGGCGCGAGATCGTGCTGGTGCCCGGCCAGGTCGAGGACGATGCGTCGGTGCGGCTGGGCTGCGACGAAGTCCGCACCAA CCTGGACCTGCTGGCGGCCGCGCGCGCCGCGCATCCCGACGCCTACATCGTCTACAAGCCGCATCCGGACGTGGTCAGTC GCAACCGCCGCGGCCGCGTGGCGCTGCGCGAGGCGCGCCGCCATGCCGATCATGTCGAGTCCGCGCTGTCGGTGGTCAGC TGCATCCAGGCGTGCGACGTGGTGCACACCATGACCTCGCTGACGGGCTTCGACGCCTTGCTGCGCGGCAAGCGCGTGGT GACGTACGGCAAGCCGTTCTATGCCGGCTGGGGCCTGACCGAGGACCGCGCCGCCGATTGGCCGCGCGACCGGCGCACCC GCCGGCTGAGCCTGGACGAGCTGGTCGCCGGCACGCTGCTGCGCTATCCGCTGTACTGGGATTGGGAACTGCGCGGATAC ACCACGTGCGAGGCGGTGCTGACGCATATTTTCGAGACGCGCGAACGCCTGCAGCGCGAAGGCCGCCTGCAAGGGCTGCG CGCCGGCTATGCGCGCCGCCAGGTGCGCAAGCTGCAGACATTGTGGCTGGCCCGATGA Protein sequence : MIELHSSGIARIPYLTELLGAPVTRYRRFWPPGGAAPRAVAGWGARPSAAPARRRARSLGVPYIALEDGFLRSFGTGRHF PPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDAVPEAMELVRERRLSKYNQGCFLATGVPADGRRRVLVVDQTE GDMSVTLGCAEAATFEAMLAAARAESPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRVYVVS SQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQRCERRGRARSVEELFAGAYFHYTRYLDPVLHRRGTIFDVIDWLTRQRD MAQRLPSRVIGVGMRRWKAAALAPMLALKPGQAVFAADAARARDLGQAAGDALVHWGARAPAGVAELAEQSGCAVLAVED GFLRSVGLGSDLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSPGELASAARIRALVVAHGITKYNVAQPQPADWPAR GREIVLVPGQVEDDASVRLGCDEVRTNLDLLAAARAAHPDAYIVYKPHPDVVSRNRRGRVALREARRHADHVESALSVVS CIQACDVVHTMTSLTGFDALLRGKRVVTYGKPFYAGWGLTEDRAADWPRDRRTRRLSLDELVAGTLLRYPLYWDWELRGY TTCEAVLTHIFETRERLQREGRLQGLRAGYARRQVRKLQTLWLAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 3e-99 | 45 |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 2e-81 | 44 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 2e-81 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| wcbA | NP_880359.1 | capsular polysaccharide export protein | VFG0692 | Protein | 9e-98 | 47 |
| wcbA | NP_880359.1 | capsular polysaccharide export protein | VFG0704 | Protein | 1e-89 | 46 |
| wcbA | NP_880359.1 | capsular polysaccharide export protein | VFG0259 | Protein | 1e-99 | 45 |
