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Name : smpB (BP1442) Accession : NP_880184.1 Strain : Bordetella pertussis Tohama I Genome accession: NC_002929 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1517762 - 1518229 bp Length : 468 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGAGTATTATCGATAACCGCAAGGCCACGCACGACTATTTCATCGAGGACCGCTACGAAGCTGGCATGGTCCTGGAAGG ATGGGAAGTGAAGGCTATCCGCGACGGCCGCGTGCAATTGAAGGAAAGCTACGTCATCGTGCGCGATGGCGAAATCTACC TGCTGGGCATGCACGTCAGCCCGCTGCCTACCGCGTCCACCCACATCCGCCCCGACGCCACGCGCACCCGCAAGCTGCTG CTCAAGGCCGAGGAAATCCGCAAGCTGATCGGCAAGGTCGAACAGCGCGGCTACACACTGGTTCCGCTCAACCTGCACTA CAAGAACGGCCGCATCAAGCTGGACTTCGCGCTGGGCCGGGGCAAGAAGCTGTACGACAAGCGCGACACCGCCCGCGAAA AGGACTGGCAGCGCGAAAAGGAACGTGTCCTGAAGCACGACACGCGCGTCAACCAGCGCGATTCCTGA Protein sequence : MSIIDNRKATHDYFIEDRYEAGMVLEGWEVKAIRDGRVQLKESYVIVRDGEIYLLGMHVSPLPTASTHIRPDATRTRKLL LKAEEIRKLIGKVEQRGYTLVPLNLHYKNGRIKLDFALGRGKKLYDKRDTAREKDWQREKERVLKHDTRVNQRDS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 3e-35 | 48 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 4e-26 | 47 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 6e-21 | 45 |
