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Name : clpB (BP1198) Accession : NP_879972.1 Strain : Bordetella pertussis Tohama I Genome accession: NC_002929 Putative virulence/resistance : Virulence Product : ATP-dependent protease, ATPase subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1258261 - 1260858 bp Length : 2598 bp Strand : + Note : Similar to Escherichia coli clpB protein ClpB or HtpM or b2592 SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 2.6e-183, 65.77% id in 862 aa, and to Neisseria meningitidis ClpB protein ClpB or Nma1683 TR:Q9JTP9 (EMBL:AL162756) (859 aa) fasta scores: E( DNA sequence : ATGCGATTCGACAAACTTACCACCAAGTTCCAGCAGGCCCTGGCGGACGCGCAAAGCCTGGCCGCCCGTAACGATCATCC CTATATCGAGCCCGTCCATGTGCTGGCGGCCCTGTTGGGCGACCCCGACAGCGGCGCGGCCAGCCTGCTGGCGCGCGCCG GCGTCGCCGTCAACCGCGTGCAGCCGGCCATCGACAGCGCCCTGAAAGGCCTGCCGCAGGTGCAGGGCGACGACAATGTC CAGGTCGGGCGCGAGCTGCAAAGCGTGCTCGTGCGCACCGACAAGGAGGCCGCGCGGCGCGGCGACACCTACATCGCCAG CGAGCTGTTCCTGCTGGCGCTGGCCGACGACAAGGGCGACGCCGGCCGCATCCTGCGCGAGGCGGGCCTGCAGAAGAAGG CCCTGGAAGCGGCCATCGACGCCGTGCGCGGCGGCGAGAACGTCTCGGGCGCCGAAGGCGAGTCCAACCGCGAGGCGCTG TCCAAGTACACGCTGGACCTCACCGAGCGCGCCCGCCAGGGCAAGCTGGATCCGGTCATCGGCCGCGACGACGAAATCCG CCGCACCATACAGATCCTGCAGCGCCGCACCAAGAACAACCCCGTGCTGATCGGCGAACCCGGCGTCGGCAAGACCGCCA TCGTCGAAGGGCTGGCGCAACGCATCGTCAACGACGAGGTGCCCGAGACGCTGCGCGGCAAGCGCGTGCTCTCGCTGGAC CTGGCGGCGCTGCTTGCCGGCGCCAAGTTCCGTGGCGAGTTCGAGGAACGCCTGAAGGCCGTGCTCAAGGAGCTGGCCCA GGACGACGGCCAGAACATCGTCTTCATCGACGAACTGCACACCATGGCCGGGGCGGGCAAGGCCGAAGGCGCCATGGACG CCGGCAACATGCTCAAGCCGGCGCTGGCGCGCGGCGAGCTGCATTGCATCGGCGCCACCACGCTGGACGAATACCGCAAG TACATCGAAAAGGATGCCGCGCTCGAGCGCCGCTTCCAGAAAGTGCTGGTCGGCGAGCCCGACGTGGAGTCCACCATCGC CATCCTGCGCGGGCTGCAGGAGCGCTATGAGCTGCACCACGGCGTCGAGATCACCGATCCGGCCATCGTGGCGGCGGCCG AGCTGTCGCACCGCTACATCACCGACCGGTTCCTGCCCGACAAGGCAATCGACCTGATCGACGAGGCCGGCGCACGCATC CGCATGGAAATCGACTCCAAGCCCGAAGTGATGGACCGGCTGGACCGGCGCATCATCCAGCTCAAGATCGAACGCGAAGC CGTCAAGAAGGAAACCGACGACGCCTCCATGCGCCGCCTGGCCGTGATCGAGGAAGAGCTGGAGAAGCTGCAGCGCGAAT ACAACGACTACGAGGAAATCTGGAAAGCCGAGAAGGCCGCCGTGCAGGGCACGCAGGCCATCAAGGAAGAGATCGACCGC GTGCGCGCCGAGATGGCCGAACTGCAGCGCAAGGGCCAGTTCGACAAGCTGGCCGAGCTGCAATACGGCAAGCTGCCCGA GCTCGAGGCGCGCCTGAAGGCCGCCGACAGCGCCGAGCGTGAAGCCGGCGAATCCGACAGCGGCAAGCCGCGCCTGTTGC GCACCCAGGTGGGCGCCGAGGAAATCGCCGAGGTCGTCTCGCGCGCCACCGGCATCCCGGTGGCCAAGATGATGCAGGGC GAACGCGACAAGCTGCTGCGCATGGAAGATTTCCTGCACAAGCGCGTCGTGGGCCAGGACGAAGCCGTGCGGCTGGTTTC CGATGCCATCCGGCGTTCGCGCGCGGGCCTGGCGGATCCGTCGCGCCCGTACGGTTCGTTCCTGTTCCTCGGGCCCACCG GCGTGGGCAAGACCGAGCTGACCCGTGCCCTGGCGGATTTCCTGTTCGATTCCGAAGAGCACATGATCCGCATCGACATG AGCGAATTCATGGAGAAGCATTCCGTGGCGCGGCTGATCGGCGCGCCGCCGGGATACGTGGGCTACGAAGAAGGGGGCTA CCTGACCGAGGCGGTGCGCCGCAAGCCGTACAGCGTGATCCTGCTCGACGAGGTCGAAAAGGCGCACCCCGACGTGTTCA ACGTGCTGCTGCAGGTGCTCGACGACGGCCGCCTGACCGATGGTCAGGGGCGCACGGTGGACTTCCGCAACACGGTCATC GTCATGACGTCCAACCTTGGGTCGCAGCACATACAAAGCATGGCGGGCAAGCCGTACGAGGTCATCAAGGAAGTCGTGTG GGACGAGCTCAAGCACACGTTCCGCCCCGAGTTCCTGAACCGTATCGATGAAGTCGTGGTCTTCCATGGCCTGGAAGCCC AGCACATCGAGTCCATCGCCCGGATCCAGCTCAAGCGGCTGGGCGAGCGTCTCGAGAAGCAGGAGATGCGCCTGGACGTG TCCGATGCGGCGCTGGCGGAAATCGCACGTTCGGGCTTCGACCCGGTGTTCGGCGCCCGGCCGCTCAAGCGAGCCATCCA GCAGCAGATCGAGAATCCGGTCGCCAAGCTGATTCTCGAAGGCGTGTTCGGACCGCGCGATGTGGTGCCGGTCGACTGGC AGGACGGCAAGTTCGTCTTCACGCGCACTTTGCAATAA Protein sequence : MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSGAASLLARAGVAVNRVQPAIDSALKGLPQVQGDDNV QVGRELQSVLVRTDKEAARRGDTYIASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRGGENVSGAEGESNREAL SKYTLDLTERARQGKLDPVIGRDDEIRRTIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNDEVPETLRGKRVLSLD LAALLAGAKFRGEFEERLKAVLKELAQDDGQNIVFIDELHTMAGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK YIEKDAALERRFQKVLVGEPDVESTIAILRGLQERYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAGARI RMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYEEIWKAEKAAVQGTQAIKEEIDR VRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQG ERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDM SEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVI VMTSNLGSQHIQSMAGKPYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDV SDAALAEIARSGFDPVFGARPLKRAIQQQIENPVAKLILEGVFGPRDVVPVDWQDGKFVFTRTLQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 5e-90 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 4e-90 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_879972.1 | ATP-dependent protease, ATPase subunit | VFG2076 | Protein | 8e-97 | 44 |
