|
Name : lolD (BP1108) Accession : NP_879889.1 Strain : Bordetella pertussis Tohama I Genome accession: NC_002929 Putative virulence/resistance : Resistance Product : lipoprotein releasing system ATP-binding protein Function : - COG functional category : V : Defense mechanisms COG ID : COG1136 EC number : - Position : 1158826 - 1159521 bp Length : 696 bp Strand : + Note : Similar to Escherichia coli lipoprotein releasing system ATP-binding protein LolD or B1117 SW:LOLD_ECOLI (P75957) (233 aa) fasta scores: E(): 1e-39, 57.79% id in 218 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa298 DNA sequence : ATGACTGAGCCGAACGACACCGGCCCGGCCCTGCAGGCCGAGCACCTGGGCAAGGTCTACGACGAAGGCCCGGCGCGCAT CGAAGTGCTCAGCGACGTGTCGCTGAGCGTGGCGCGCGGCGAGATGGTCGCCATCGTCGGCGCCTCGGGCTCGGGCAAGA GCACCTTGCTGCACATCCTGGGCCTGTTGGACGTGCCCTCCAGCGGCACGGTCAGCGTCGACGGCGTGCCCGCCGCGGGG CTGTCCGAGAAGCGCAAGAGCGCGCTGCGCAACCGCAGCCTCGGCTTCGTGTACCAGTTCCACCACCTGCTGCCGGAATT CTCGGCCCTGGACAATGTGGCCATGCCGCTGATCGTGCGGCGCGAGAATCGCGACCGTGCGCGCGCCCAGGCACGCGAAG TGCTGGAACTGGTGGGGCTGGCCGCGCGCGAGGAGCACTTTCCGGGCCAGCTGTCCGGGGGCGAGCGGCAGCGCGTGGCG CTGGCGCGCGCCCTGGTGACGCGGCCGGCCTGCGTGCTGGCCGACGAGCCCACCGGCAACCTGGATCGCCATACGGCGCA CAATATGTTCGAGCTGCTCACGCGCGTGAACCGCGAATCCGGCACGGCTTTCGTGATCGTCACCCACGATCCGGAGCTGG CCGCACGCGCCGATCGCCAGCTGCACATGGAAAACGGGCGCCTGCAGCCGGATTGA Protein sequence : MTEPNDTGPALQAEHLGKVYDEGPARIEVLSDVSLSVARGEMVAIVGASGSGKSTLLHILGLLDVPSSGTVSVDGVPAAG LSEKRKSALRNRSLGFVYQFHHLLPEFSALDNVAMPLIVRRENRDRARAQAREVLELVGLAAREEHFPGQLSGGERQRVA LARALVTRPACVLADEPTGNLDRHTAHNMFELLTRVNRESGTAFVIVTHDPELAARADRQLHMENGRLQPD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| Cp1002_1464 | YP_005681730.1 | ABC transporter ATP-binding protein | Not tested | PiCp 5 | Protein | 4e-31 | 42 |
| CpC231_1466 | YP_005683828.1 | ABC transporter ATP-binding protein | Not tested | PiCp 5 | Protein | 7e-32 | 41 |
| cpfrc_01473 | YP_003783873.1 | hypothetical protein | Not tested | PiCp 5 | Protein | 7e-32 | 41 |
| CpI19_1473 | YP_005685914.1 | ABC transporter ATP-binding protein | Not tested | PiCp 5 | Protein | 7e-32 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lolD | NP_879889.1 | lipoprotein releasing system ATP-binding protein | NC_008702.1.4606598. | Protein | 3e-34 | 46 |
| lolD | NP_879889.1 | lipoprotein releasing system ATP-binding protein | NC_012469.1.7686878. | Protein | 8e-42 | 46 |
