|
Name : lysS (BP1102) Accession : NP_879883.1 Strain : Bordetella pertussis Tohama I Genome accession: NC_002929 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1151365 - 1152885 bp Length : 1521 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACCGACCAATCGCCCGCCCCGACCGCCCAGGATGAAAACCGCTTGATCGCCGAACGGCGCGCCAAGCTGGCCAGACT GCGTGAAACCGGCGTTGCGTTCCCCAACAATTTCGTGCCCGATGCGCACGCCGCCGACCTGCACGCCAGGTACGACGGCC TGGACCAGGAGGCGCTGACGGCCGCGGCGGTCACGGTCAAGGTGGCCGGCCGCATGATGCTCAAGCGCGTCATGGGCAAG GCCAGCTTCGCCACGCTGCAGGACGGCAGCGGCCGCATCCAGATCTACCTCGAGCGCGGCACGCTCGGCGAAGAGGCCTA CGCCGCTTTCAAGCAATGGGACATCGGCGACATCATCGCCATCGAGGGGCCGGTCTTCAAGACCAACAAGGGCGAGCTGT CGGTGCACGCCAACTCGGCGCGCCTGCTGTCGAAGTCGCTGCGTCCGCTGCCCGACAAGTTCCATGGCGTGGCCGACCAG GAGCTGCGCTACCGCCAGCGCTACGTCGACCTCATCATGACCGACGCCACCCGCCGCACCTTCGAGGCGCGCAGCAAGGC CGTCGGCGGCATCCGCCAGGCCATGCTCAATGCGGGCTTTCTCGAAGTCGAGACGCCGATGCTGCACCCGATTCCCGGTG GCGCGGCGGCCAAGCCCTTCGTGACCCACCACAATGCGCTGGACATGCAGATGTTCCTGCGCATCGCGCCCGAGCTTTAC CTCAAGCGCCTGATCGTCGGCGGCTTCGAGCGCGTGTTCGAAATCAACCGCAACTTCCGCAACGAGGGGGTGAGCCCGCG CCACAACCCCGAGTTCACCATGATGGAGTTCTACGCCGCGTACGCCGACTATCGCTGGCTGATGGACTTCACCGAGGACC TGATCCGCCAGGCCGCGATCGCGGCCACCGGCAGCGCCGTGCTCAGCTACCAGGACCGCGAGCTGGACCTGTCCCAGCCG TTCGACCGCCTGACGATCTGCGAAGCCATCCTGAAGTACGCCGAGGGCTATACCCAGGCGCAGCTCGACGACCCCGCGTT CGTGCGCGCCGAGCTCAGGAAACTGGGAGCCAACGTCGAGGGTCCGCCGCTGGCGCGCGCCGGCCTGGGCGCGCTGCAAC TGGCGCTGTTCGAGGAAACCGCCGAAGCCAAGCTGTGGCGCCCCACCTACATCATCGACTACCCGGTCGAGGTCTCGCCC CTGGCGCGCGCCTCCGACACCCGCGACGGCATTACCGAGCGCTTCGAACTGTTCATCACCGGACGCGAAATCGCCAACGG CTTCTCCGAGCTCAACGACCCTGAAGACCAGGCCGAGCGTTTCCGCGCCCAGGTCGAGGCCAAGGACGCCGGCGACGAAG AAGCCATGTACTTCGACGCCGACTACATCCGCGCGCTCGAATACGGCATGCCCCCCACCGGCGGCTGCGGCATCGGCATC GACCGCCTGGTCATGCTGCTGACCGACAGCCCCAGCATCCGCGACGTCATCCTCTTCCCGCACCTGCGCCGGGAAGACTG A Protein sequence : MTDQSPAPTAQDENRLIAERRAKLARLRETGVAFPNNFVPDAHAADLHARYDGLDQEALTAAAVTVKVAGRMMLKRVMGK ASFATLQDGSGRIQIYLERGTLGEEAYAAFKQWDIGDIIAIEGPVFKTNKGELSVHANSARLLSKSLRPLPDKFHGVADQ ELRYRQRYVDLIMTDATRRTFEARSKAVGGIRQAMLNAGFLEVETPMLHPIPGGAAAKPFVTHHNALDMQMFLRIAPELY LKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYADYRWLMDFTEDLIRQAAIAATGSAVLSYQDRELDLSQP FDRLTICEAILKYAEGYTQAQLDDPAFVRAELRKLGANVEGPPLARAGLGALQLALFEETAEAKLWRPTYIIDYPVEVSP LARASDTRDGITERFELFITGREIANGFSELNDPEDQAERFRAQVEAKDAGDEEAMYFDADYIRALEYGMPPTGGCGIGI DRLVMLLTDSPSIRDVILFPHLRRED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-129 | 58 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-75 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_879883.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 7e-130 | 58 |
