Gene Information

Name : BPP3998 (BPP3998)
Accession : NP_886144.1
Strain : Bordetella parapertussis 12822
Genome accession: NC_002928
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4332848 - 4333525 bp
Length : 678 bp
Strand : +
Note : ortholog of Bordetella pertussis (BX470248) BP0158

DNA sequence : 
ATGCGCATCCTCGTTATCGAAGACGAGCCCAAGCTGGCCGACTATCTGCACAAGGGCCTGTCCGAGCAAAGCCATATCGT
CGACGTCGCGCGCGACGGCGTCAACGGCCGCCACCTGGCGCTCGAGGGCGACTACGAACTGGTCATCCTCGACGTGATGC
TGCCCGACATCGACGGCTTCGCCGTCCTGGCGGCGCTGCGCGCGGCCGCGCGCAACACGCCGGTGCTGATGCTGACGGCG
CGCGACCGGGTCGAGGACCGCGTGCGCGGGCTGGAAGGCGGCGCCGACGACTACCTGGTCAAGCCGTTCGCGTTCTCCGA
GCTCCTGGCGCGCGTGCATGCGCTGCAGCGGCGCGGGCGCAGCCAGGAATCCACCCTGCTGCGCCTGGCCGACCTGGAGC
TGGACCTGGCCAGCCGCAAGGCGCAGCGCGGCGGACGCCGCCTGGACCTGACGGCCAAGGAGTTCTCGCTGCTGGCGCTG
CTGCTGCGCCGCCAGGGCCAGATCCTGTCGCGCACCACGCTGGCCGAGCAGGTCTGGGACATGAACTTCGACAGCGACAC
CAACGTCATCGACGTCGCCATCCGCCGGTTGCGCGGCAAGCTGGACGACCCCTACGACGCCAAGCTGCTGCATACCGTGC
GCGGCATGGGCTACGTGCTGGAATCGCGCCCGTCATGA

Protein sequence : 
MRILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGFAVLAALRAAARNTPVLMLTA
RDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGRSQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLAL
LLRRQGQILSRTTLAEQVWDMNFDSDTNVIDVAIRRLRGKLDDPYDAKLLHTVRGMGYVLESRPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-48 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-47 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BPP3998 NP_886144.1 two-component response regulator BAC0197 Protein 2e-54 65
BPP3998 NP_886144.1 two-component response regulator BAC0125 Protein 1e-55 62
BPP3998 NP_886144.1 two-component response regulator BAC0083 Protein 9e-55 61
BPP3998 NP_886144.1 two-component response regulator BAC0638 Protein 2e-47 59
BPP3998 NP_886144.1 two-component response regulator BAC0111 Protein 8e-56 57
BPP3998 NP_886144.1 two-component response regulator BAC0308 Protein 1e-51 55
BPP3998 NP_886144.1 two-component response regulator BAC0347 Protein 3e-48 50
BPP3998 NP_886144.1 two-component response regulator AE000516.2.gene3505. Protein 9e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BPP3998 NP_886144.1 two-component response regulator VFG0596 Protein 3e-48 55
BPP3998 NP_886144.1 two-component response regulator VFG1389 Protein 4e-29 44
BPP3998 NP_886144.1 two-component response regulator VFG1390 Protein 5e-35 41