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Name : wcbA (BPP2955) Accession : NP_885145.1 Strain : Bordetella parapertussis 12822 Genome accession: NC_002928 Putative virulence/resistance : Virulence Product : capsular polysaccharide export protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3563 EC number : - Position : 3172846 - 3174723 bp Length : 1878 bp Strand : - Note : ortholog of Bordetella pertussis (BX470248) BP1631 DNA sequence : GTGCCCTACATTGCGCTGGAAGACGGTTTCCTGCGCTCGTTCGGCACCGGGCGCCATTTTCCGCCTCTGTCGCTGGTGGT CGATCGCCTGGGCATCTACTACGACGCGACGCGCGAATCCGAGCTGGAGTGCCTGCTGGCGTCGTCGCGCACGCTGCTCG ACGGCATCGAGGACGCCGTGCCCGAAGCCATGGAGCTGGTGCGCGAACGCCGCCTGTCGAAGTACAACCATGGCGGCTTC CTGGCCACCGGCGTGCCGGCCGACGGCCGGCGCCGGGTGCTGGTGGTGGACCAGACCGAAGGCGACATGAGCGTGACCCT GGGTTGCGCCGAGGCGGCCACCTTCGAGGCCATGCTGGCGGCGGCGCGGGCGGAGAACCCTGGCGCGCTGATCTGCGTCA AGACGCATCCCGAGGTGGCGGCCGGCGACAAGTCGGGCTATCTGTCGCGGGTTACCGACGACGCCGATACGTTGGCGCTG CGCCACGACATGAATCCCCTGGCCTTGCTGGAACAGATGGACCGGGTCTATGTGGTCAGTTCGCAGATGGGGTTCGAAGC CTTGATGCTGGACAAGCCCGTGATCTGCTTCGGCATGCCCTGGTATGCCGGCTGGGGCGTGACCGACGATCGCCAGCGCT GCGAGCGGCGCGGCCGCGCGCGCAGCGTCGAGGAGCTGTTCGCCGGCGCGTATTTCCACTACACCCGCTACCTGGATCCG GTGCTGCATCGCCGCGGCACGATCTTCGACGTGATCGACTGGCTGACGCGCCAGCGCGACATGGCGCAACGCCTGCCGTC GCGCGTGATCGGCGTGGGCATGCGCCGCTGGAAGGCGGCCGCGCTGGCGCCCATGCTGGCGTTAAAGCCCGGCCAGGCGG TGTTCGCCGCCGACGCCGCCCGCGCGCGGGACCTGCGGCCGGCCGCGGGCGACGCCCTGGTGCATTGGGGCGCCCGGGCG CCCGCCGGCGTGGCCGAGCTGGCCGAACAGAGCGGTTGCGCGGTGCTGGCCGTGGAGGATGGCTTCCTGCGGTCGGTCGG CCTGGGGTCGGACCTGATCCGGCCGCTGAGCCTGGCGCTGGACGGGCGGGGCATCTACTTCGACCCCCGCCAGCCCAGCG ATCTGGAGCATGAATTGAACCGGGGCGGGTTCAGCCTGGGAGAGCTGGCCAGCGCGGCGCGCATCCGCGCGCTGGTGGTC GCCCACGGCATCACCAAGTACAACGTGGCGCAGCCCCAGCCGGCCGACTGGCCGGCGCGCGGGCGCGAGATCGTGCTGGT GCCCGGCCAGGTCGAGGACGATGCGTCGGTGCGGCTGGGCTGCGACGAAGTCCGCACCAACCTGGACCTGCTGGCGGCCG CGCGCGCCGCGCATCCCGACGCCTACATCGTCTACAAGCCGCATCCGGACGTGGTCAGCCGCAACCGCCGCGGCCGCGTG GCGCTGCGCGAGGCGCGCCGCCATGCCGATCATGTCGAGTCCGCGCTGTCGGTGGTCAGCTGCATCCAGGCGTGCGACGT GGTGCACACCATGACCTCGCTGACGGGCTTCGACGCCTTGCTGCGCGACAAGCGCGTGGTGACGTACGGCAAGCCGTTCT ATGCCGGCTGGGGCCTGACCGAGGACCGCGCCGCCGATTGGCCGCGCGACCGGCGCACCCGCCGGCTGAGCCTGGACGAG CTGGTCGCCGGCACGCTGCTGCGCTATCCGCTGTACTGGGATTGGGAACTGCGCGGATACACCACGTGCGAGGCGGTGCT GACGCATATTTTCGAGACGCGCGAACGCCTGCAGCGCGAAGGCCGCCTGCAAGGGCTGCGCGCCGGCTATGCGCGCCGCC AGGTGCGCAAGCTGCAGACATTGTGGCTGGCCCGATGA Protein sequence : MPYIALEDGFLRSFGTGRHFPPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDAVPEAMELVRERRLSKYNHGGF LATGVPADGRRRVLVVDQTEGDMSVTLGCAEAATFEAMLAAARAENPGALICVKTHPEVAAGDKSGYLSRVTDDADTLAL RHDMNPLALLEQMDRVYVVSSQMGFEALMLDKPVICFGMPWYAGWGVTDDRQRCERRGRARSVEELFAGAYFHYTRYLDP VLHRRGTIFDVIDWLTRQRDMAQRLPSRVIGVGMRRWKAAALAPMLALKPGQAVFAADAARARDLRPAAGDALVHWGARA PAGVAELAEQSGCAVLAVEDGFLRSVGLGSDLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSLGELASAARIRALVV AHGITKYNVAQPQPADWPARGREIVLVPGQVEDDASVRLGCDEVRTNLDLLAAARAAHPDAYIVYKPHPDVVSRNRRGRV ALREARRHADHVESALSVVSCIQACDVVHTMTSLTGFDALLRDKRVVTYGKPFYAGWGLTEDRAADWPRDRRTRRLSLDE LVAGTLLRYPLYWDWELRGYTTCEAVLTHIFETRERLQREGRLQGLRAGYARRQVRKLQTLWLAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 3e-98 | 45 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 2e-80 | 44 |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 2e-80 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| wcbA | NP_885145.1 | capsular polysaccharide export protein | VFG0692 | Protein | 1e-97 | 47 |
| wcbA | NP_885145.1 | capsular polysaccharide export protein | VFG0704 | Protein | 2e-89 | 46 |
| wcbA | NP_885145.1 | capsular polysaccharide export protein | VFG0259 | Protein | 1e-98 | 45 |
