Gene Information

Name : bscS (BPP2236)
Accession : NP_884487.1
Strain : Bordetella parapertussis 12822
Genome accession: NC_002928
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 2379991 - 2380266 bp
Length : 276 bp
Strand : +
Note : ortholog of Bordetella pertussis (BX470248) BP2239

DNA sequence : 
GTGACCAGCATGCAAACCCAAGACCTGGTTTCGTTCATGACACAGGCGTTGTACCTGGTGCTCTGGCTGTCGTTGCCGCC
CATCGCCGTGGCGGCGATCGTGGGAACGCTGTTTTCCCTGTTGCAGGCCTTGACGCAGGTGCAGGAGCAGACCCTGTCCT
TCGCCGTGAAGCTGATAGCCGTGTTCGCCACGCTGATGCTGGCGGCCCGGTGGATAAGCGCGGAAATCTATAACTTCACG
ATTGCGGTGTTCGATGCCTTTCATCGGATCCACTGA

Protein sequence : 
MTSMQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFATLMLAARWISAEIYNFT
IAVFDAFHRIH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-14 56
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 8e-10 51
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 8e-10 51
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 8e-10 51
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 2e-09 49
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 2e-09 49
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 9e-13 49
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 9e-13 49
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 6e-13 48
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 4e-13 48
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 2e-10 47
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 1e-10 47
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 2e-07 47
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 2e-07 47
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 2e-07 47
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 4e-09 47
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 2e-12 46
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 2e-07 45
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 2e-07 45
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 7e-10 45
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 2e-06 45
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 2e-06 45
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 2e-06 45
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 2e-06 45
escS YP_003236102.1 T3SS structure protein EscS Virulence LEE Protein 4e-11 45
escS NP_290282.1 hypothetical protein Virulence LEE Protein 4e-11 45
ECs4582 NP_312609.1 EscS Virulence LEE Protein 4e-11 45
escS AAC38370.1 EscS Virulence LEE Protein 3e-11 45
escS AAC31527.1 L0048 Virulence LEE Protein 3e-11 45
escS ACU09472.1 hypothetical protein Not tested LEE Protein 3e-11 45
unnamed AAL06355.1 EscS Virulence LEE Protein 2e-11 44
escS AAK26701.1 EscS Virulence LEE Protein 1e-11 43
escS AAL57528.1 EscS Virulence LEE Protein 1e-11 43
escS CAC81848.1 EscS protein Virulence LEE II Protein 1e-11 43
escS YP_003223489.1 T3SS structure protein EscS Virulence LEE Protein 2e-11 43
escS YP_003232139.1 T3SS structure protein EscS Virulence LEE Protein 2e-11 43
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 6e-08 43
escS AFO66341.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-10 42
escS AFO66401.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-10 42
escS CAI43888.1 EscS protein Virulence LEE Protein 3e-11 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
bscS NP_884487.1 type III secretion protein VFG0043 Protein 7e-35 99
bscS NP_884487.1 type III secretion protein VFG0395 Protein 1e-14 58
bscS NP_884487.1 type III secretion protein VFG0187 Protein 4e-10 54
bscS NP_884487.1 type III secretion protein VFG0520 Protein 7e-08 47
bscS NP_884487.1 type III secretion protein VFG0550 Protein 5e-07 45
bscS NP_884487.1 type III secretion protein VFG0716 Protein 1e-11 45
bscS NP_884487.1 type III secretion protein VFG0826 Protein 1e-11 45
bscS NP_884487.1 type III secretion protein VFG1013 Protein 9e-09 43
bscS NP_884487.1 type III secretion protein VFG1772 Protein 6e-11 42
bscS NP_884487.1 type III secretion protein VFG2132 Protein 2e-12 41