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Name : clpB (BPP1814) Accession : NP_884084.1 Strain : Bordetella parapertussis 12822 Genome accession: NC_002928 Putative virulence/resistance : Virulence Product : ATP-dependent protease, ATPase subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1935811 - 1938408 bp Length : 2598 bp Strand : + Note : ortholog of Bordetella pertussis (BX470248) BP1198 DNA sequence : ATGCGATTCGACAAACTTACCACCAAGTTCCAGCAGGCCCTGGCGGACGCGCAAAGCCTGGCCGCCCGTAACGATCATCC CTATATCGAGCCCGTCCATGTGCTGGCGGCCCTGTTGGGCGACCCCGACAGCGGCGCGGCCAGCCTGCTGGCGCGCGCCG GCGTCGCCGTCAACCGCGTGCAGCCGGCCATCGACAGCGCCCTGAAGGGCCTGCCGCAGGTGCAGGGCGAGGACAACGTC CAGGTCGGGCGCGAGCTGCAAAGCGTGCTCGTGCGCACCGACAAGGAGGCCGCGCGGCGCGGCGACACCTACATCGCCAG CGAGCTGTTCCTGCTGGCGCTGGCCGACGACAAGGGCGACGCCGGCCGCATCCTGCGCGAGGCGGGCCTGCAGAAGAAGG CCCTGGAAGCGGCCATCGACGCCGTGCGCGGCGGCGAGAACGTCTCGGGCGCGGAAGGCGAGTCCAACCGCGAGGCGCTG TCCAAGTACACGCTGGACCTCACCGAGCGCGCCCGCCAGGGCAAGCTGGATCCGGTCATCGGCCGCGACGACGAAATCCG CCGCACCATACAGATCCTGCAGCGCCGCACCAAGAACAACCCCGTGCTGATCGGCGAACCCGGCGTCGGCAAGACCGCCA TCGTCGAAGGGCTGGCGCAACGCATCGTCAACGACGAGGTGCCCGAGACGCTGCGCGGCAAGCGCGTGCTCTCGCTGGAC CTGGCGGCGCTGCTTGCCGGCGCCAAGTTCCGTGGCGAGTTCGAGGAACGCCTGAAGGCCGTGCTCAAGGAGCTGGCCCA GGACGACGGCCAGAACATCGTCTTCATCGACGAACTGCACACCATGGTCGGTGCGGGCAAGGCCGAAGGGGCCATGGACG CCGGCAACATGCTCAAGCCGGCGCTGGCGCGCGGCGAGCTGCATTGCATCGGCGCCACCACGCTGGACGAATACCGCAAG TACATCGAAAAGGATGCCGCGCTCGAGCGCCGCTTCCAGAAGGTGCTGGTCGGCGAGCCCGACGTGGAATCCACCATCGC CATCCTGCGCGGGCTGCAGGAGCGCTACGAGCTGCACCACGGCGTCGAGATCACCGATCCGGCCATCGTGGCGGCGGCCG AGCTGTCGCACCGCTACATTACCGACCGGTTCCTGCCCGACAAGGCAATCGACCTGATCGACGAGGCCGGCGCGCGCATC CGCATGGAAATCGACTCCAAGCCCGAAGTGATGGACCGCCTGGACCGGCGCATCATCCAGCTCAAGATCGAACGCGAAGC CGTCAAGAAGGAAACCGACGACGCCTCCATGCGCCGCCTGGCCGTGATCGAGGAAGAGCTGGAGAAGCTGCAGCGCGAAT ACAACGACTACGAGGAAATCTGGAAAGCCGAGAAGGCCGCCGTGCAGGGCACGCAGGCCATCAAGGAAGAGATCGACCGC GTGCGCGCCGAGATGGCCGAACTGCAGCGCAAGGGCCAGTTCGACAAGCTGGCCGAGCTGCAATACGGCAAGCTGCCCGA GCTCGAGGCGCGCCTGAAGGCCGCCGACAGCGCCGAGCGCGAGGCCGGCGAATCCGACAGCGGCAAGCCGCGCCTGTTGC GCACCCAGGTGGGCGCCGAGGAAATCGCCGAGGTCGTCTCGCGCGCCACCGGCATCCCGGTGGCCAAGATGATGCAGGGC GAACGCGACAAGCTGCTGCGCATGGAAGATTTCCTGCACAAGCGCGTCGTGGGCCAGGACGAAGCCGTGCGGCTGGTTTC CGATGCCATCCGGCGTTCGCGCGCGGGCCTGGCGGATCCGTCGCGTCCGTATGGTTCGTTCCTGTTCCTCGGGCCCACCG GCGTGGGCAAGACGGAGCTGACCCGTGCCCTGGCGGATTTCCTGTTCGACTCCGAAGAGCACATGATCCGCATCGACATG AGCGAGTTCATGGAGAAGCATTCCGTGGCGCGCCTGATCGGCGCGCCGCCGGGATACGTGGGCTACGAAGAAGGGGGCTA CCTGACCGAGGCGGTGCGCCGCAAGCCGTACAGCGTGATCCTGCTCGACGAGGTCGAAAAGGCGCATCCCGACGTGTTCA ACGTGCTGCTGCAGGTGCTCGACGACGGCCGCCTGACCGACGGCCAGGGGCGCACGGTGGACTTCCGCAATACGGTCATC GTCATGACGTCCAACCTTGGGTCGCAGCACATACAAAGCATGGCGGGCAAGCCGTACGAGGTCATCAAGGAAGTCGTGTG GGACGAGCTCAAGCATACGTTCCGCCCCGAGTTCCTGAACCGTATCGATGAAGTCGTGGTCTTCCATGGCCTGGAAGCCC AGCACATCGAGTCCATCGCCCGGATCCAGCTCAAGCGGCTGGGCGAGCGTCTCGAGAAGCAGGAGATGCGCCTGGACGTG TCCGATGCGGCGCTGGCGGAAATCGCACGCTCGGGCTTCGACCCGGTGTTCGGCGCCCGGCCGCTCAAGCGGGCCGTCCA GCAGCAGATCGAGAACCCGGTCGCCAAGCTGATTCTCGAAGGCGTGTTCGGACCGCGCGATGTGGTGCCGGTCGACTGGC AGGACGGCAAGTTCGTCTTCACGCGCACTTTGCAATAA Protein sequence : MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSGAASLLARAGVAVNRVQPAIDSALKGLPQVQGEDNV QVGRELQSVLVRTDKEAARRGDTYIASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRGGENVSGAEGESNREAL SKYTLDLTERARQGKLDPVIGRDDEIRRTIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNDEVPETLRGKRVLSLD LAALLAGAKFRGEFEERLKAVLKELAQDDGQNIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK YIEKDAALERRFQKVLVGEPDVESTIAILRGLQERYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAGARI RMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYEEIWKAEKAAVQGTQAIKEEIDR VRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQG ERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDM SEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVI VMTSNLGSQHIQSMAGKPYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDV SDAALAEIARSGFDPVFGARPLKRAVQQQIENPVAKLILEGVFGPRDVVPVDWQDGKFVFTRTLQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-92 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 1e-90 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 1e-90 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_884084.1 | ATP-dependent protease, ATPase subunit | VFG2076 | Protein | 3e-97 | 44 |
