Gene Information

Name : wbpO (BB0876)
Accession : NP_887425.1
Strain : Bordetella bronchiseptica RB50
Genome accession: NC_002927
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 930303 - 931676 bp
Length : 1374 bp
Strand : +
Note : ortholog of Bordetella pertussis (BX470248) BP3150

DNA sequence :
GTGGCCCCCGTGCCCGCGCGCGGGGTGCTACAACGCTACAAACACGTTCAAACTACATACAATTCCGTAGCCGTCACACG
GTTGATAGGGAGATTTATCTTGCGCATTGATGATGTGAAACTGGCCGTTGTCGGCCTCGGATACGTGGGGCTGCCGCTGG
CCGTGGAGTTCGGCAAGAAGCGCCCGGTGATCGGCTTCGATATCAACGAGCGCCGCATCGCCGCGCTCAAGGCCGGCCAC
GATCACACCCTGGAAGTCGAGGACGACGAACTGGCCCAGGCCGCGCAGCTCAGCTACACGGCCGAGCGCGCCGACCTGGC
CCAGGCCAATGTGTTCATCGTTACCGTGCCCACGCCGATCGACGAGTACAAGCAGCCCGACCTCACGCCGCTGGTCAAGG
CCAGCGAGACCATCGGCGCGGTGCTCAAGCGCGGCGACATCGTGATCTACGAATCGACCGTGTACCCGGGCGCCACCGAG
GAAGACTGCGTGCCGGTGCTCGAGCGCGTGTCGGGCCTGAAGTTCAACCAGGACTTCTACGCCGGCTACAGCCCCGAGCG
CATCAACCCGGGCGACAAGGCGCACCGCGTCAACACCATCAAGAAGGTGACCTCGGGCTCGACGCCGGAAGTCGCCGAGC
TGGTTGACCAGCTGTACAACGAGATCATCACGGCCGGCACCCACAAGGCCTCGAGCATCCGCGTGGCCGAGGCCGCCAAG
GTGATCGAGAACACGCAGCGCGACGTCAACATCGCGCTGATCAACGAGCTGGCGCTGATCTTCAACAAGATGGGCATCGA
CACCGAGGCCGTGCTGCAGGCCGCCGGCACCAAGTGGAACTTCCTGCCGTTCCGTCCGGGCCTGGTGGGCGGGCACTGCA
TCGGCGTGGATCCGTACTACCTGACGCACAAGGCGCAGTCGATCGGCTACCACCCCGAGATCATCCTGGCGGGCCGCCGC
CTGAACGACTCGATGGGCGGCTACGTGGTCTCGCAGCTGGTCAAGGCCATGGCCAAGCGCCGCATCCACGTCGAGGGCGC
GCGCGTGCTGCTGATGGGCCTGACGTTCAAGGAAAACTGCCCCGACCTGCGCAACACGCGCGTGGTGGACATCGTGCGCG
AGCTGGGCGAGTACCACGTCGACGTGGACGTGTACGACCCGTGGGTGGACCCGGCCGAGGCCGAGCACGAGTACGGCATC
ACGCCGGTGGCCAAGCCGGCCGCCGGGGCGTACGACGCGGTCATCCTGGCGGTGTCGCACCACCAGTTCGTCGAGATGGG
CGCCGAGGCGATCCGCAAGTTCGGCAAGGCCGAGCACATCCTGTACGACCTGAAGTATGTGCTGGCCCCCGACCAGGCCG
ACCTGAGGCTGTAA

Protein sequence :
MAPVPARGVLQRYKHVQTTYNSVAVTRLIGRFILRIDDVKLAVVGLGYVGLPLAVEFGKKRPVIGFDINERRIAALKAGH
DHTLEVEDDELAQAAQLSYTAERADLAQANVFIVTVPTPIDEYKQPDLTPLVKASETIGAVLKRGDIVIYESTVYPGATE
EDCVPVLERVSGLKFNQDFYAGYSPERINPGDKAHRVNTIKKVTSGSTPEVAELVDQLYNEIITAGTHKASSIRVAEAAK
VIENTQRDVNIALINELALIFNKMGIDTEAVLQAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQSIGYHPEIILAGRR
LNDSMGGYVVSQLVKAMAKRRIHVEGARVLLMGLTFKENCPDLRNTRVVDIVRELGEYHVDVDVYDPWVDPAEAEHEYGI
TPVAKPAAGAYDAVILAVSHHQFVEMGAEAIRKFGKAEHILYDLKYVLAPDQADLRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 6e-145 69
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 6e-145 69
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 7e-112 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
wbpO NP_887425.1 polysaccharide biosynthesis protein VFG0431 Protein 3e-145 69