Gene Information

Name : BB0379 (BB0379)
Accession : NP_886928.1
Strain : Bordetella bronchiseptica RB50
Genome accession: NC_002927
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 391583 - 392296 bp
Length : 714 bp
Strand : -
Note : -

DNA sequence : 
ATGTGGCAGTGCCTGCTTATTGAGGATGACCAAGCCAACGCGCGCTATCTTGCCAATGGCCTGACGGAGCTGGGGCACAT
GGTTACCGTCAGCGGGGATGGGGCGGGCGGCCTGGAGAATGCCATGAAGGACCAATGGGACATCATCATCCTGGACCGCA
TGCTGCCCAATAACGTGGATGGCCTTTCGATACTTTCCACGCTGCGGGCGCTGGGCAAGAAAACGCCGGTCCTGGTGCTC
AGCGCGCTGTCGGCTGTCGACGACCGGGTTGACGGTTTACGGGCCGGCGGTGACGACTATCTGGTCAAGCCGTTCTCCTT
CTCCGAGCTGGTTGCCAGGCTGGATGCCCTGGTCAGGCGGACGCGCCCCGATCCGGACGTGAAGGAACTGCGGATTGCGG
ATCTGTCGGTCAATGTCGCCACGCAAAAGGTGCAACGCGCCGGAGTGCCGATATCCCTGCAGCCGCAGGAGTTCCGGTTA
TTGGTCTATCTCATGCTGCACGCTCACCGGATCGTGACGCGAACGATGTTGCTCGAGACGATCTGGGGCTACAGCTTCGA
CCCGCAGTCGAATGTGATCGATGTCCAGGTCAGCCGGTTGCGCCGCAAGATAGACACTGCCTCGGCGACCCCGCTGATTC
ACACCGTACGCGGCGCCGGATACACCCTTTCCGATAAGCAGGGGCCCGGCAACATGGACCTCGACAAAGCATGA

Protein sequence : 
MWQCLLIEDDQANARYLANGLTELGHMVTVSGDGAGGLENAMKDQWDIIILDRMLPNNVDGLSILSTLRALGKKTPVLVL
SALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRTRPDPDVKELRIADLSVNVATQKVQRAGVPISLQPQEFRL
LVYLMLHAHRIVTRTMLLETIWGYSFDPQSNVIDVQVSRLRRKIDTASATPLIHTVRGAGYTLSDKQGPGNMDLDKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-37 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-36 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BB0379 NP_886928.1 transcriptional regulatory protein BAC0308 Protein 3e-41 45
BB0379 NP_886928.1 transcriptional regulatory protein BAC0125 Protein 1e-40 44
BB0379 NP_886928.1 transcriptional regulatory protein BAC0347 Protein 2e-42 44
BB0379 NP_886928.1 transcriptional regulatory protein BAC0197 Protein 2e-38 43
BB0379 NP_886928.1 transcriptional regulatory protein BAC0111 Protein 5e-45 43
BB0379 NP_886928.1 transcriptional regulatory protein AE016830.1.gene1681. Protein 1e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BB0379 NP_886928.1 transcriptional regulatory protein VFG0596 Protein 1e-37 44
BB0379 NP_886928.1 transcriptional regulatory protein VFG1389 Protein 2e-37 43
BB0379 NP_886928.1 transcriptional regulatory protein VFG1390 Protein 3e-39 41