|
Name : gabD (BB0322) Accession : NP_886871.1 Strain : Bordetella bronchiseptica RB50 Genome accession: NC_002927 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 328968 - 330449 bp Length : 1482 bp Strand : + Note : ortholog of Bordetella pertussis (BX470248) BP0757 DNA sequence : ATGTCCTTATCCGTCGGCAACGCCGCGCTGCTGCCTGGCCGCAACCTGATTGGATCGGAATGGCGCGAAGCGGCGCTGGG CGCGCGCTTCGCGGTTGCGGATCCCGCCACCGGCAAGGTGATCGCGCATGTGCCCGACAGCGGCGCGCGCGATGCGGGCG CGGCCGTCACGGCGGCGCACCAGGCCTTCGCGGACTGGCGCCGGACCCCCGCCAAGGTCCGCGCGCAGATCATCAAGCGC TGGAATGCCCTGTTGCACGAGAACGCCGAAGACCTGGCCCGTCTGATTTCCTCGGAGCAGGGCAAGCCGCTGGCCGAGGC TCGCGGCGAGGTGAGCTATGCGGCCAGTTATGTCGAGTGGTTCGCCGAAGAGGCCACGCGCGCCGACGGCGACCTCATCC CCAGCCCGGCGCAAGGGCGGCGCATGTTCGCGCTGCGCGAGCCGGTCGGCGTGGTGGCGGCGATCACGCCGTGGAACTTC CCGGCGGCCATGATCGCCCGCAAGATCGCCCCGGCCCTGGCGGCCGGGTGCACGGTCGTGTGCAAGCCGGCCGAGGACAC GCCGCTGACGTCGCTGGCGCTGACGGCCCTGGCGCAGCAGGCGGGGGTGCCGCCCGGCGTGCTCAACATCGTGACCGCCT CGCGGGGCCGCGCCGCCGAAGTCGCCGACGCCTGGCTGGACGACCCGCGCGTGCGCAAGATCACCTTTACCGGCTCCACC CCCGTGGGCAAGCATCTGGCCAGGCGCAGCGCCGACACCTTGAAGCGGGTCTCGCTGGAGCTGGGCGGCAATGCGCCTTT CATTGTGTTCGACGACGCCGACCTGGACGCCGCGGTCGAGGGCCTGATGGTGTCCAAGTTCCGCAATGGCGGCCAGACCT GCGTCTGTCCCAACCGCATCTTCGTGCAGGCCGGCGTGCACGACGCGTTCGTCCGCAAGCTGGCGGCGCGGGTGGAGGGG CTGGTCGTCGGGCCGGCCAGCGACCCGGCTTCGCAGATCGGGCCGATGATCAACGCGCGCGCCGTCGAGAAGATCGAGCA TCACGTCGCCGACGCCCTGGAGCGCGGCGCTCGCCTGGCAGTGGGCGGCAAGCGCATCCACTCGGCCCGTTGCGCCGGCG ACCACTATTACGCGCCGACCGTGTTGACGGGGGTGGACGAGACCATGGCGTGCTTTCGCGAGGAAACCTTCGGGCCGGTC GCGCCGATCACGGTCTTCGCCAGCGAGGCCGACGTGGTGGCGGCGGCCAATGCGACCGCGTTCGGCCTGGCCGCCTACTT CTACTCGACCGACGTGCGGCGCATCTGGCGCCTGGCCGACGCGCTGGAGACCGGCATCGTCGGCGTCAACGAGGGCGCGC TGGCCGCCGAGGCGGCCCCGTTTGGCGGCGTCAAGGACTCGGGTTACGGCCGCGAAGGATCGCGCCATGGCCTGGCCGAG TACATGCAGATCAAGTACGTCTGCCAGGGCCAGCTGGACTGA Protein sequence : MSLSVGNAALLPGRNLIGSEWREAALGARFAVADPATGKVIAHVPDSGARDAGAAVTAAHQAFADWRRTPAKVRAQIIKR WNALLHENAEDLARLISSEQGKPLAEARGEVSYAASYVEWFAEEATRADGDLIPSPAQGRRMFALREPVGVVAAITPWNF PAAMIARKIAPALAAGCTVVCKPAEDTPLTSLALTALAQQAGVPPGVLNIVTASRGRAAEVADAWLDDPRVRKITFTGST PVGKHLARRSADTLKRVSLELGGNAPFIVFDDADLDAAVEGLMVSKFRNGGQTCVCPNRIFVQAGVHDAFVRKLAARVEG LVVGPASDPASQIGPMINARAVEKIEHHVADALERGARLAVGGKRIHSARCAGDHYYAPTVLTGVDETMACFREETFGPV APITVFASEADVVAAANATAFGLAAYFYSTDVRRIWRLADALETGIVGVNEGALAAEAAPFGGVKDSGYGREGSRHGLAE YMQIKYVCQGQLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 1e-116 | 55 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 5e-74 | 41 |
