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Name : gabD (BB1806) Accession : NP_888351.1 Strain : Bordetella bronchiseptica RB50 Genome accession: NC_002927 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 1905790 - 1907259 bp Length : 1470 bp Strand : - Note : ortholog of Bordetella pertussis (BX470248) BP1976 DNA sequence : ATGACGCAGTTGACCCAACCCCTGAGCCGCGCCGAACTGCTGCGCGACGCCTGCTACATCGACGGAAAGTGGGTAGGCGC CGGCAACGGCCCGTCCATCCCGGTCGATAACCCGTCCACCGGCAAGACCATCATCTCGGTGCCCAAGCTGGGCCGCAAGG AAGCCGAGCAGGCCATCGACGCCGCCGAGGCCGCCCTGCCCGCCTGGAGCGCCAGGACCGGCAAGGAGCGCGCCGCGATC CTGCTGAAGTGGGCCCAGCTGATGATGGAAAACCAGCAGGACCTGGCCGTCATCATGACGTCCGAGCAAGGCAAGCCCGT AGCCGAGGCCGCCGGCGAGATCGCCTACGCCGCGTCCTTCCTGGAGTGGTTCGCCGAAGAAGCCAAGCGCATCGACGGCG ACATCCTGCAAAGCCCCAAGGGCGGCCAGCGCCTGATGGTGCTCAAGCAGCCCATCGGCGTGACCGCCGCCATCACGCCG TGGAACTTCCCGGCCGCCATGATCACCCGCAAGGTCGGCCCGGCCCTGGCCGCCGGCTGCACCATGGTGGTCAAGCCGGC CCAGCAGACGCCGCTGACCGCGCTGGCGCTGGCCGTGCTGGCCGAGCAGGCCGGCGTGCCGGCCGGCGTGTTCCAGGTCG TGACCGGCAGCTCGCGTGAAATCGGCGCGGCCCTGTGCGAAAGCGAAGTGGTACGCAAGCTGAGCTTCACCGGCTCGACC GAAGTCGGCCGCACGCTCATGGAGCAATGCGCGCCCACCATCAAGAAACTGTCGCTGGAACTGGGCGGCAACGCGCCGTT CATCGTGTTCGACGACGCCGACCTGGATCGCGCCATCGACGGCATCCTGGCCTCCAAGTACCGCAACGCCGGCCAGACCT GCGTATGCGCCAACCGCATCTACGTGCAGGCCGGCGTCTACGAGGAAGTGGCCAAGCGCCTGGTCGAGAAGGTCAACGCC ATGAAGGTGGGCGACGGCTTCGAACAGGGCGTCACCCAGGGCCCGCTGATCGACACCGCCGCCGTGGCCAAGGTGCAGGA ACACATCGCCGACGCCACCGCGCACGGCGCCAAGGTCATCGCCGGCGGCCAGCCGCATGCGCTGGGCGGCAGCTTCTTCC AGCCCACGGTGGTGCGCGACGTCACGCAGTCGATGCGCTTTGCCGTCGAGGAAACCTTCGGCCCGGTCGCCCCGCTGTTC AAGTTCGAAAGCGAAGACGAAGTCATCGGCATGGCCAACAACACCATCTTCGGCCTGGCCGCCTACTTCTACACGCGCGA CTACGCCCGGATCTGGCGCGTCTCCGAAGCGCTGGAATACGGCATCGTCGGCATCAACACCGGCATCATCTCCAATGAAG TCGGCCCGTTCGGCGGCGTCAAGCAATCCGGCCTGGGCCGCGAAGGCTCGAAGTACGGGATCGAGGACTACCTCGAGCTG AAATACCTCTGCGTGGACCTGGGCGCCTGA Protein sequence : MTQLTQPLSRAELLRDACYIDGKWVGAGNGPSIPVDNPSTGKTIISVPKLGRKEAEQAIDAAEAALPAWSARTGKERAAI LLKWAQLMMENQQDLAVIMTSEQGKPVAEAAGEIAYAASFLEWFAEEAKRIDGDILQSPKGGQRLMVLKQPIGVTAAITP WNFPAAMITRKVGPALAAGCTMVVKPAQQTPLTALALAVLAEQAGVPAGVFQVVTGSSREIGAALCESEVVRKLSFTGST EVGRTLMEQCAPTIKKLSLELGGNAPFIVFDDADLDRAIDGILASKYRNAGQTCVCANRIYVQAGVYEEVAKRLVEKVNA MKVGDGFEQGVTQGPLIDTAAVAKVQEHIADATAHGAKVIAGGQPHALGGSFFQPTVVRDVTQSMRFAVEETFGPVAPLF KFESEDEVIGMANNTIFGLAAYFYTRDYARIWRVSEALEYGIVGINTGIISNEVGPFGGVKQSGLGREGSKYGIEDYLEL KYLCVDLGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 8e-135 | 65 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 5e-70 | 41 |
