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Name : bcrD (BB1612) Accession : NP_888157.1 Strain : Bordetella bronchiseptica RB50 Genome accession: NC_002927 Putative virulence/resistance : Virulence Product : type III secretion pore protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1717772 - 1719871 bp Length : 2100 bp Strand : - Note : ortholog of Bordetella pertussis (BX470248) BP2261 DNA sequence : ATGACGAGCAAGAAATCCATTCTCCGCCTGCAACGCGCGGTGGCGCTGGCCACCAGCCGCAACGACATCGTACTGGCCGT GCTCATCGTGGCGATCGTCTTCATGATGATCCTGCCGTTGCCCACGACGCTGGTCGACGTGCTGATCGGTGCGAACATGA CGCTGTCCGCGGTCCTGCTGATGGTCGCGATGTACCTGCCTTCGCCCCTGGCGTTTTCCTCGTTCCCTTCGGTCCTGCTG GTCACCACGCTGTTCCGGCTGGGCATCTCCATCGCGACCACGCGGCTGATCCTGCTGCAAGGCGATGCCGGCCACATCAT CGAGACCTTCGGCAACTTCGTGGTGGGCGGCAACCTGATCGTCGGCCTGGTGGTTTTCCTCATCCTCACGATCGTGCAGT TCGTGGTCATCACCAAAGGCGCGGAGCGGGTGGCCGAAGTCGCCGCGCGCTTCTCGCTGGACGCCATGCCCGGCAAGCAG ATGTCCATCGACGCGGACTTGCGCGCGGGCACCATAGACATGGACGAAGCCCGCCGCCGACGCCGTACGGTCGAGAAGGA AAGCCAACTGTATGGCGCCATGGACGGCGCGATGAAGTTCGTCAAGGGCGATGCCATCGCCGGCCTGATCATCGTTGCCG TCAACCTGCTTGGCGGCATGCTGGTCGGCGTGCTGCAGCGCGGCCTGAGCGCCGGCGAGGCCGTGCAGACATATGCCATC CTGACCATAGGCGACGGGCTCATCGCGCAGATCCCGGCGCTGTTCATCGCCATCTGCGCGGGAATCATCGTGACGCGGGT GCAGACCGGGGATGGCCCCTCCAACGTAGGCACCGACATCGGCGCACAAGTGCTGGCGCAGCCTCGCGCCCTGGTCATTG CCGGCGCGATCTCGGCAGGCCTGGGCCTCATTCCCGGCATGCCCACGCTGGTCTTCTTCGCCCTGGCCGCCGTGGTGGGC ACCATCGGTTTCGTACTGCTGCGCGCATCCCAGCGTCCGCCCGAAGGCGCCGGGCCCGCGCTCGCCGGCATGGCTGCCGA CGGCCTGCCCCGCACCCGCGCGCCGGCGGATGGACAGGCGGAATTCGCTCCCACCGTCCCGCTGATCATCGACGTGGCCG CGCGGCTGCAGCCCCGGTTCGAGCCGGCCACCCTCACCGACGATCTGCTGCAGATCCGGCGGGCGCTCTATTTCGACTTG GGCGTGCCATTTCCCGGCATCCAGTTGCGCTTCACCGAAGCGCTGGCCGCCAATACCTACACCATCGTGCTGTCGGAGAT CCCGGTGGCGCAGGGGATGTTGCGCGACGATGCCGTGCTGGTGCGGGACACCGAGCAGAACCTGCAGGCCCTGCGGATCG CATACGAAACGGGCGCGGCCTTTCTGCCCGATACGCCCACGATCTGGGTTGCAGCCAGTCTGACCGGCGCCTTGCGCGAT GCAGGTATTCCTTACCTGGGTATCAGCCAGATCCTGACTTGGCACTTGGCATATGTACTGAAAAAATATTCAGCCGATTT CATCGGCATCCAGGAAACCCGGTTTCTGCTTTCGGCCATGGAAGAACGATTTCCCGATCTGGTCAAGGAGTGCCTGCGCG TCATGCCGGTGCAGAAGATTGCCGAAATCCTGCAGCGCCTTGTTTCCGAGGAAGTGTCGATACGCAACCTGCGCGCCGTC CTGGAAGCGCTGGTCGAATGGGGCCAGAAGGAAAAGGATACCGTCCTGCTTACGGAGTATGTCCGAATCGCACTCAAGCG CTATATCAGCTACAAGTACACCAGCGGCCACAATATCCTGCCCGCCTACCTGCTGGCCCCCAAGGTCGAGGAAACCGTGC GCGCCGCCATCCGGCAGACCGCCGCCGGCAGTTATCTCGCCCTCGATCCGGACACGACACGCCGGCTGGTCGAGCACATA CGCCAATGTGTCGGCGATCTGGCCGCCGGCGCGAGCCGTCCCGTCTTGCTGACGTCGATGGACATCCGGCGCTACACGCG CAAGATGATCGAAGCCGATCTCTACGCCCTGCCGGTGCTGTCCTACCAGGAACTGACGCCGGAGATCAATGTACAGCCCC TGGGCAGGGTGGATCTATGA Protein sequence : MTSKKSILRLQRAVALATSRNDIVLAVLIVAIVFMMILPLPTTLVDVLIGANMTLSAVLLMVAMYLPSPLAFSSFPSVLL VTTLFRLGISIATTRLILLQGDAGHIIETFGNFVVGGNLIVGLVVFLILTIVQFVVITKGAERVAEVAARFSLDAMPGKQ MSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIVAVNLLGGMLVGVLQRGLSAGEAVQTYAI LTIGDGLIAQIPALFIAICAGIIVTRVQTGDGPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVG TIGFVLLRASQRPPEGAGPALAGMAADGLPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDL GVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAYETGAAFLPDTPTIWVAASLTGALRD AGIPYLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAV LEALVEWGQKEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHI RQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 4e-180 | 59 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 2e-116 | 48 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 5e-99 | 46 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 2e-99 | 46 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 2e-99 | 46 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 4e-95 | 46 |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 7e-100 | 45 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 7e-100 | 45 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 9e-95 | 44 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 8e-97 | 44 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 9e-95 | 44 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 8e-96 | 44 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 6e-96 | 44 |
| invA | YP_217815.1 | invasion protein | Virulence | SPI-1 | Protein | 5e-98 | 44 |
| invA | NP_457290.1 | possible secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 5e-98 | 44 |
| invA | NP_806499.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 5e-98 | 44 |
| invA | NP_461817.1 | needle complex export protein | Virulence | SPI-1 | Protein | 5e-98 | 44 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 1e-99 | 43 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 1e-99 | 43 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 8e-100 | 43 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 6e-100 | 43 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 6e-100 | 43 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 1e-90 | 43 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 2e-98 | 43 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 1e-98 | 43 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 1e-98 | 43 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 5e-99 | 43 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 3e-98 | 43 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 2e-98 | 43 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 2e-98 | 43 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 2e-100 | 43 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 5e-93 | 43 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 7e-97 | 43 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 7e-97 | 43 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 2e-95 | 43 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 5e-95 | 43 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 8e-98 | 42 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 6e-98 | 42 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 3e-98 | 42 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 3e-98 | 42 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 2e-98 | 42 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 9e-98 | 42 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 2e-98 | 42 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 8e-97 | 42 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 3e-92 | 42 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 3e-92 | 42 |
| ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 5e-98 | 42 |
| ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 5e-97 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| bcrD | NP_888157.1 | type III secretion pore protein | VFG0064 | Protein | 0.0 | 99 |
| bcrD | NP_888157.1 | type III secretion pore protein | VFG0198 | Protein | 2e-166 | 59 |
| bcrD | NP_888157.1 | type III secretion pore protein | VFG0384 | Protein | 1e-176 | 59 |
| bcrD | NP_888157.1 | type III secretion pore protein | VFG2126 | Protein | 7e-130 | 47 |
| bcrD | NP_888157.1 | type III secretion pore protein | VFG0557 | Protein | 2e-98 | 44 |
| bcrD | NP_888157.1 | type III secretion pore protein | VFG0514 | Protein | 3e-100 | 43 |
| bcrD | NP_888157.1 | type III secretion pore protein | VFG0729 | Protein | 3e-99 | 43 |
| bcrD | NP_888157.1 | type III secretion pore protein | VFG2461 | Protein | 4e-97 | 43 |
| bcrD | NP_888157.1 | type III secretion pore protein | VFG0813 | Protein | 1e-98 | 42 |
| bcrD | NP_888157.1 | type III secretion pore protein | VFG1780 | Protein | 1e-95 | 41 |
| bcrD | NP_888157.1 | type III secretion pore protein | VFG1006 | Protein | 8e-93 | 41 |
