Gene Information

Name : MT3100 (MT3100)
Accession : NP_337615.1
Strain : Mycobacterium tuberculosis CDC1551
Genome accession: NC_002755
Putative virulence/resistance : Unknown
Product : IS6110, transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3372136 - 3373020 bp
Length : 885 bp
Strand : +
Note : identified by similarity to GP:581365; match to protein family HMM PF00665

DNA sequence : 
TTGCGGTGGGGTGTCGAGTCGATCTGCACACAGCTGACCGAGCTGGGTGTGCCGATCGCCCCATCGACCTACTACGACCA
CATCAACCGGGAGCCCAGCCGCCGCGAGCTGCGCGATGGCGAACTCAAGGAGCACATCAGCCGCGTCCACGCCGCCAACT
ACGGTGTTTACGGTGCCCGCAAAGTGTGGCTAACCCTGAACCGTGAGGGCATCGAGGTGGCCAGATGCACCGTCGAACGG
CTGATGACCAAACTCGGCCTGTCCGGGACCACCCGCGGCAAAGCCCGCAGGACCACGATCGCTGATCCGGCCACAGCCCG
TCCCGCCGATCTCGTCCAGCGCCGCTTCGGACCACCAGCACCTAACCGGCTGTGGGTAGCAGACCTCACCTATGTGTCGA
CCTGGGCAGGGTTCGCCTACGTGGCCTTTGTCACCGACGCCTACGCTCGCAGGATCCTGGGCTGGCGGGTCGCTTCCACG
ATGGCCACCTCCATGGTCCTCGACGCGATCGAGCAAGCCATCTGGACCCGCCAACAAGAAAGCGTACTCGACCTGAAAGA
CGTTATCCACCATACGGATAGGGGATCTCAGTACACATCGATCCGGTTCAGCGAGCGGCTCGCCGAGGCAGGCATCCAAC
CGTCGGTCGGAGCGGTCGGAAGCTCCTATGACAATGCACTAGCCGAGACGATCAACGGCCTATACAAGACCGAGCTGATC
AAACCCGGCAAGCCCTGGCGGTCCATCGAGGATGTCGAGTTGGCCACCGCGCGCTGGGTCGACTGGTTCAACCATCGCCG
CCTCTACCAGTACTGCGGCGACGTCCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCG
GCTGA

Protein sequence : 
MRWGVESICTQLTELGVPIAPSTYYDHINREPSRRELRDGELKEHISRVHAANYGVYGARKVWLTLNREGIEVARCTVER
LMTKLGLSGTTRGKARRTTIADPATARPADLVQRRFGPPAPNRLWVADLTYVSTWAGFAYVAFVTDAYARRILGWRVAST
MATSMVLDAIEQAIWTRQQESVLDLKDVIHHTDRGSQYTSIRFSERLAEAGIQPSVGAVGSSYDNALAETINGLYKTELI
KPGKPWRSIEDVELATARWVDWFNHRRLYQYCGDVPPVELEAAYYAQRQRPAAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 1e-49 55
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 3e-57 55
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 8e-50 54
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-59 52
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-59 52
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-59 52
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-61 52
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 9e-61 52
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 8e-60 52
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-60 52
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 5e-62 52
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 8e-62 52
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 5e-62 52
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 4e-58 52
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-61 51
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 6e-59 51
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-61 51
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-61 51
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-61 51
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-61 51
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-44 50
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 5e-53 47
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 3e-38 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MT3100 NP_337615.1 IS6110, transposase VFG1602 Protein 3e-58 52