Gene Information

Name : SSO1078 (SSO1078)
Accession : NP_342550.1
Strain : Sulfolobus solfataricus P2
Genome accession: NC_002754
Putative virulence/resistance : Virulence
Product : ABC transporter ATP binding subunit
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 935746 - 936423 bp
Length : 678 bp
Strand : +
Note : Transport

DNA sequence : 
ATGTCCGTAATAAGACTTGAAAATGTTACCAAGATCTATGAGGGGAATGTTAAGACTATTGCACTTAGAGATATAAACCT
AAGTATTGATGAAGGGGAGTTTATTTCAATATTAGGACCTTCTGGCAGTGGAAAATCTACTCTCTTATCAATCTTAGGAA
TTTTGGATAGACCATCACAAGGAAAGGTATACATTTACGAAGTTGACGTAACTAAACTAAGTGATAACGAGATCTCTAAA
ATTAGAAACGAATACATAGGCTTTGTGTTTCAGAATTTCAATCTAATTCAAAGACTTAGTGTTCTACAAAACGTTGAGTT
ACCATTAGTAGCTAGAGGAATACCAAAAAAGAAAAGAGAGGAAATTGCGATAAATTCTCTAAAACTAGTGGGATTAGATG
GATTAATAAATAAAAAACCATCTGAACTTTCTGGAGGACAGCAGCAAAGAGTTGCCATAGCTCGTGCATTAGCACAAAAT
CCAAAGATCATATTAGCTGATGAACCTACCGGAAATTTGGATAGTAGTAATGCAAAAATTGTAATGAACATATTCAAAAA
GATTAACGAGGAGTTTAAAACTACGATAGCAGTAGTAACACATGATAGAGAAGTTGCGAGTTATACAAAGAGAAAGATAT
ACATTAGAGATGGAAAGATAGTTGGTGAAGAAAGATGA

Protein sequence : 
MSVIRLENVTKIYEGNVKTIALRDINLSIDEGEFISILGPSGSGKSTLLSILGILDRPSQGKVYIYEVDVTKLSDNEISK
IRNEYIGFVFQNFNLIQRLSVLQNVELPLVARGIPKKKREEIAINSLKLVGLDGLINKKPSELSGGQQQRVAIARALAQN
PKIILADEPTGNLDSSNAKIVMNIFKKINEEFKTTIAVVTHDREVASYTKRKIYIRDGKIVGEER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-30 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-30 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSO1078 NP_342550.1 ABC transporter ATP binding subunit NC_012469.1.7686878. Protein 2e-47 50
SSO1078 NP_342550.1 ABC transporter ATP binding subunit CP001581.1.gene798.p Protein 2e-35 44
SSO1078 NP_342550.1 ABC transporter ATP binding subunit NC_008702.1.4606598. Protein 3e-38 44
SSO1078 NP_342550.1 ABC transporter ATP binding subunit CP001581.1.gene598.p Protein 5e-37 42
SSO1078 NP_342550.1 ABC transporter ATP binding subunit NC_012469.1.7686946. Protein 3e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSO1078 NP_342550.1 ABC transporter ATP binding subunit VFG0869 Protein 1e-20 41