Gene Information

Name : CC_3315 (CC_3315)
Accession : NP_422109.1
Strain : Caulobacter crescentus CB15
Genome accession: NC_002696
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3564265 - 3565731 bp
Length : 1467 bp
Strand : +
Note : identified by match to protein family HMM

DNA sequence : 
ATGACCAAAACGGTCCTTGTCGTCGATGACGACCCGACACAACGTCGGTTGATTCAAGCGGTGCTCGAGCGCGACGGGTT
CGCGGTCTCGCACGCGGAAGGCGGCGACGCGGCGATCGCGCACCTGACGTCCGGCGCGCCCGCCGATGTCATCCTGCTGG
ATCTCGTCATGCCTGGCCTCAACGGTCAGGACGCCCTGAAGGAAATGCGCGCCCGCGGCTTCAACCAGCCCGTGATCGTG
CTGACGGCCAGCGGTGGCGTCGACACCGTGGTCAAGGCCATGCAGGCCGGCGCCTGCGACTTCTTCATCAAGCCCGCCTC
GCCCGAGCGGATCACCGTGTCGATCCGCAACGCCCTGTCGATGGGCGACCTCAAGGGCGAGGTCGAGCGGCTGACCAAGC
GCGCGGGCGGCAAGACCACCTTCGCGGACCTGATCGGCGCCTCGCCGGTCATGACCATGGTCAAGCGCATGGGCGAGCGG
GCCGCCAAGAGCGGTATCCCGGTGCTGATCACCGGCGAAAGCGGCGTCGGCAAGGAGCTGATCGCCCGCGCCGTCCACGG
CTCTTCCGACCGCGCCGGCAAGCCGTTTGTCGCGGTCAACTGCGGCGCGATCCCCGAGAACCTCGTCGAGTCGATCCTGT
TCGGCCACGAGAAGGGCTCGTTCACCGGCGCCACCGACAAGCATCTGGGCAAGTTCAAGGAGGCCGACGGCGGCACCCTG
TTCCTCGATGAGGTCGGCGAGCTGCCGCTCGACATGCAGGTCAAGCTGCTGCGCGCCCTGCAGGAGGGCGAGATCGACCC
GATCGGCTCCAAGCGCTCGATCAAGGTCGATGTCCGGATCGTGTCGGCGACCAATCGCGATCTGCAGCAGGCCGTTTCGG
GCGGCCGGTTCCGCGAAGACCTGTTTTATCGCCTGAACGTGTTCCCGATCGAGGCGCCGTCCCTGCGCGAGCGTCGCGAG
GACATCCCGGCCCTCGTCGAGGCGTTCATCCGCCGGTTCAACGTCGAAGAAGGCAAGCGCGTGATCGGCGCCTCGCCCGA
GACGATGCAACTGCTGACCAGCTTCGACTGGCCCGGCAATGTGCGCCAACTGGAAAACACCGTCTATCGCGCCATCGTGC
TGGCCGATGCGCCCTATCTGCAGCCGTTCGACTTCCCGGCGATCTCGGGCCTGGCCGCGCCGATCGAGGCCGTATCGATC
TCGCCCTCGCCGCCGCCTGCAGCCCTGTTGCAAGCCACGCATGCGGCGATGGCCGCCGCCGTCGCAGAGGCGCCTGTGCG
CATCCTCGACGATCGCGGTCACCTGCGGACCCTGGAGGAGATCGAGCGCGACCTCATCCAGCATGCGATCGACGTCTATG
CCGGCCACATGAGCGAGGTCGCGCGGCGTTTGGGCATCGGTCGCTCGACCCTCTATCGCAAGGTTCGCGAGCAGGGCATC
GAAGTCGACATGAAGGAAGCGGGCTGA

Protein sequence : 
MTKTVLVVDDDPTQRRLIQAVLERDGFAVSHAEGGDAAIAHLTSGAPADVILLDLVMPGLNGQDALKEMRARGFNQPVIV
LTASGGVDTVVKAMQAGACDFFIKPASPERITVSIRNALSMGDLKGEVERLTKRAGGKTTFADLIGASPVMTMVKRMGER
AAKSGIPVLITGESGVGKELIARAVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFKEADGGTL
FLDEVGELPLDMQVKLLRALQEGEIDPIGSKRSIKVDVRIVSATNRDLQQAVSGGRFREDLFYRLNVFPIEAPSLRERRE
DIPALVEAFIRRFNVEEGKRVIGASPETMQLLTSFDWPGNVRQLENTVYRAIVLADAPYLQPFDFPAISGLAAPIEAVSI
SPSPPPAALLQATHAAMAAAVAEAPVRILDDRGHLRTLEEIERDLIQHAIDVYAGHMSEVARRLGIGRSTLYRKVREQGI
EVDMKEAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-54 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-54 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CC_3315 NP_422109.1 Fis family transcriptional regulator BAC0089 Protein 8e-78 45
CC_3315 NP_422109.1 Fis family transcriptional regulator BAC0467 Protein 4e-78 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CC_3315 NP_422109.1 Fis family transcriptional regulator VFG1214 Protein 6e-67 42
CC_3315 NP_422109.1 Fis family transcriptional regulator VFG0116 Protein 1e-64 42
CC_3315 NP_422109.1 Fis family transcriptional regulator VFG1249 Protein 5e-69 42