Gene Information

Name : CC_1304 (CC_1304)
Accession : NP_420117.1
Strain : Caulobacter crescentus CB15
Genome accession: NC_002696
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1451939 - 1452604 bp
Length : 666 bp
Strand : +
Note : identified by match to protein family HMM

DNA sequence : 
ATGCGCGCGCTCGTCGTCGAGGATGATCCGGTCGTGGGCCCAGACCTCGCCAAGGCGCTGAGCGCGTCGGGCTTCGTGGT
CGATATCGCCCGCGATGGCGAGGACGCGTCCTTCAAGGGCGAGGTCGAGGATTACGCGCTTGTCGTGCTGGATCTGGGCC
TGCCGCGTCTTGACGGTCTGTCGGTGCTTCGGCGCTGGCGGGCCAATGACCGCGCCTTCCCGGTGCTGATCCTGTCGGCG
CGGGGCGACTGGACCGAGAAGGTCGAAGGCATCGAGGCCGGCGCCGACGACTATCTGGCCAAGCCTTTCGAGATGGGCGA
ACTGCTGGCGCGCGCGCGTGGCCTCGTGCGCCGTGCGGCGGGCCGCACGTCACCCGTGATCGGCGCGGGGCGACTGGCCC
TGGATACGCGGCGCATGTCCGCCACCCTGGACGGCGCGCCGATCCGCTTGTCGCCGCTTGAGTTCCGGCTGCTGGACTGC
CTGGCGCACAACCCCGGACGGGCTGTTTCGGCCGGTGAGCTTGCCGAACAGCTCTACGGCGTCGCCGACACCGCCGACAC
CAACGCCATCGAGGCCCTGGTGGCGCGCCTTCGCCGCAAGATCGGCGCCGACGTTATCGAAACCCGCAGAGGCTTTGGCT
ACCTGCTGGCCGGCGGGACGGCGTGA

Protein sequence : 
MRALVVEDDPVVGPDLAKALSASGFVVDIARDGEDASFKGEVEDYALVVLDLGLPRLDGLSVLRRWRANDRAFPVLILSA
RGDWTEKVEGIEAGADDYLAKPFEMGELLARARGLVRRAAGRTSPVIGAGRLALDTRRMSATLDGAPIRLSPLEFRLLDC
LAHNPGRAVSAGELAEQLYGVADTADTNAIEALVARLRRKIGADVIETRRGFGYLLAGGTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CC_1304 NP_420117.1 DNA-binding response regulator NC_002516.2.879194.p Protein 5e-37 43
CC_1304 NP_420117.1 DNA-binding response regulator BAC0487 Protein 1e-29 43
CC_1304 NP_420117.1 DNA-binding response regulator BAC0530 Protein 1e-33 43
CC_1304 NP_420117.1 DNA-binding response regulator CP001138.1.gene1939. Protein 8e-34 42
CC_1304 NP_420117.1 DNA-binding response regulator CP000647.1.gene1136. Protein 1e-33 42
CC_1304 NP_420117.1 DNA-binding response regulator CP001918.1.gene2526. Protein 2e-33 41
CC_1304 NP_420117.1 DNA-binding response regulator NC_002695.1.913289.p Protein 2e-32 41
CC_1304 NP_420117.1 DNA-binding response regulator CP000034.1.gene2022. Protein 2e-33 41
CC_1304 NP_420117.1 DNA-binding response regulator BAC0197 Protein 2e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CC_1304 NP_420117.1 DNA-binding response regulator VFG0475 Protein 7e-34 42