Gene Information

Name : CC_1293 (CC_1293)
Accession : NP_420106.1
Strain : Caulobacter crescentus CB15
Genome accession: NC_002696
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1437252 - 1437980 bp
Length : 729 bp
Strand : -
Note : identified by match to protein family HMM

DNA sequence : 
ATGCACATACTGGTGGTGGAGGACGATACGCGCGTCGCAGACTTCCTTGAGCGCGGCTTGAAGGCCGAAGGGTACAAGGT
CCGCGTGGCGCGAGACGGTGTGAGCGGCCTGGAGGCGGCCCGCGACCTGGACGCCATGCTGCGTGAGCTGGATCAGCGCG
GCGTGATCCTCTTGGACCTGATGCTTCCGAAGATGACCGGCATGGAAGTCTGCCAGACCCTTCGGGCGTCCGGTGTCTTG
ACGCCAGTCCTGATGCTGACCGCCCTGGGGGCCGTTGATGACCGCGTCACGGGCCTGAGAACGGGCGCTGACGACTACCT
GGTCAAGCCGTTCTCCTTCGAGGAGCTCCTTGCCCGGATCGAAGCGCTGCTTCGTCGATCGCGGGATCAGCGGGCGCCCG
CCAATCGGACGCTGAAGGCCGGAAACGTCGAACTGGACCGGACGACCATGCGCGTCTCCCGCGACGGCGAGGAAGTGGTC
CTGACCGCCCGCGAGCTTGCGCTCCTGGAGCTGTTCCTGTCCTCGCCAGGACGGGTTCTGAGCCGCGAACGCATCCTCTC
CAACGTCTGGGGCGTGGACGAGGACCCCCTGACGAACGTGGTCGATGTCTATGTCCGTCGACTGAGGGCCAAGATCGATC
CCCCTCTCGCGTCGTCCTTTATCACCACGGTGAGGGGCCTGGGATATCGGCTCGAGCCCGATCCCGCGAAAGTCCCGATC
GGTGCCTAG

Protein sequence : 
MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDLMLPKMTGMEVCQTLRASGVL
TPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARIEALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVV
LTARELALLELFLSSPGRVLSRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLEPDPAKVPI
GA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-33 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-32 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CC_1293 NP_420106.1 DNA-binding response regulator HE999704.1.gene1528. Protein 9e-35 47
CC_1293 NP_420106.1 DNA-binding response regulator BAC0125 Protein 2e-37 46
CC_1293 NP_420106.1 DNA-binding response regulator BAC0308 Protein 6e-31 46
CC_1293 NP_420106.1 DNA-binding response regulator BAC0638 Protein 6e-27 45
CC_1293 NP_420106.1 DNA-binding response regulator BAC0197 Protein 2e-32 44
CC_1293 NP_420106.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 2e-32 42
CC_1293 NP_420106.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 2e-32 42
CC_1293 NP_420106.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 2e-32 42
CC_1293 NP_420106.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 2e-32 42
CC_1293 NP_420106.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 2e-32 42
CC_1293 NP_420106.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 2e-32 42
CC_1293 NP_420106.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 2e-32 42
CC_1293 NP_420106.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 2e-32 42
CC_1293 NP_420106.1 DNA-binding response regulator BAC0083 Protein 1e-31 42
CC_1293 NP_420106.1 DNA-binding response regulator BAC0111 Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CC_1293 NP_420106.1 DNA-binding response regulator VFG0596 Protein 2e-33 44
CC_1293 NP_420106.1 DNA-binding response regulator VFG1390 Protein 4e-35 44
CC_1293 NP_420106.1 DNA-binding response regulator VFG1389 Protein 2e-24 41