|
Name : smpB (CC_1196) Accession : NP_420011.1 Strain : Caulobacter crescentus CB15 Genome accession: NC_002696 Putative virulence/resistance : Unknown Product : ssrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1356442 - 1356900 bp Length : 459 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGTCCAAGCCGATCGCGGAAAATCGGCGCGCGCGCTTCGACTACTTCATCGAGGAGACGTTCGAGGCCGGCATCATGCT GACCGGCACCGAGGTGAAGAGCCTGCGGACCGGCCGGGCGAACATCGCCGAGTCCTACGCCTCGGTGGAGGGGCGTGAGA TCGTGCTGATCAACGCCGACATCCCACCCTACGGCCACGCCAACCGATTCAACCACGAACCGCGTCGTCACCGGAAGCTG CTGCTGCATCGTCGCCAGATCGACAAGCTGATCGGCGCGGTTCAGCGCGAGGGGCGCACCCTGGTGCCGATCAAGCTCTA TTGGAACGACAAGGGGCTGGCGAAGCTGGAAGTCGGGCTCGCCAAGGGCAAGAAACTGCACGACAAGCGCGACACCGCCG CCGAACGCGACTGGCAGCGCGACAAGGCCCGCCTGATGAAGGGCGATCGCGGCGACTGA Protein sequence : MSKPIAENRRARFDYFIEETFEAGIMLTGTEVKSLRTGRANIAESYASVEGREIVLINADIPPYGHANRFNHEPRRHRKL LLHRRQIDKLIGAVQREGRTLVPIKLYWNDKGLAKLEVGLAKGKKLHDKRDTAAERDWQRDKARLMKGDRGD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 3e-21 | 53 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 5e-25 | 50 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 2e-18 | 48 |
