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Name : ECs4667 (ECs4667) Accession : NP_312694.1 Strain : Escherichia coli Sakai Genome accession: NC_002695 Putative virulence/resistance : Virulence Product : outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 4700637 - 4703171 bp Length : 2535 bp Strand : - Note : similar to outer membrane usher protein precursors e.g. [Salmonella typhimurium] gi|1170817|sp|P43662|LPFC_SALTY, [Escherichia coli] gi|2829634|sp|P75857|YCBS_ECOLI DNA sequence : ATGGCCTCTTCGCATCTTTTCATTACGCTTGCATCGGGCATATGTCTGCTCTGTTCCATATCTGCTTTTGCCCGGGATAG CTTGTTCAACCCCAGATTACTGGAACTGGATCATCCTGCGGATAATATTGATATTCACCAGTTCAACCGTTCGAATACCT TACCTGCGGGAACATACAAAGTTGATGTGATGATCAACGGCATGCTCTTCGAACGCCAGGAAGTTAAATTCGCCCAGGAT AACCCTGATGCTGAACTCCACCCATGCTACGTGGCGATAAAAAACGTGCTGGCGACCTATGGTATAAAAGTTGATGCGAT AAAATCTCTGGCGAATGTTGATGACAAAACATGCGTAAATCCAGTTCCGCTGATCGACGGGGCTACCTGGTTACTGGACG CCAGTAAACTTGCATTGAATATTACTATTCCGCAAATTTATCTCAACAATGCAGTTAATGGTTATATCAGCCCTTCCCGT TGGGATCAGGGGATCAATGCCATGATGATGAATTATGATTTTTCGGCATCGCATACCATCCGGTCAAATTATGACGACGA CGATGACAGTTATTATCTGAATTTGCGTAATGGTATTAATTTAGGCGCATGGCGTTTTCGTAATTACAGCACCCTGAATT CTTATGACGGTAATGTGGACTACCATTCCGTCAGTAATTACATTCAGCGCGACATCATGGCATTACGTAGCCAGATTATG ATTGGCGATACCTGGACGGCAAGCGATGTATTTGATAGTACACAGGTGCGTGGCGTGCGGCTGTATACCGATGACGATAT GTTGCCCTCCAGCCAGAACGGCTTTGCGCCAGTGGTACATGGGATTGCGAAAACTAACGCCACGGTGATCATCAAACAAA ACGGCTACGTTATTTATCAATCAGCCGTACCACAGGGCGCATTTGCCCTCACCGACTTAAACACGACCAGTAGCGGCGGC GATCTCGATGTCACTATCAAAGAAGAAGATGGCAGCGAGCAGCACTTTATTCAGCCATTTACTTCACTGGCCATTCTCAA GCGTGAAGGTCAGACCGATGTAGACCTTAGCATTGGAGAAGTGCGCGACGAAAGCGGCTTTACGCCTGAGGTCTTGCAGT TACAAGCAATGCACGGTTTCCCTTTGGGAATAACTTTGTATGGCGGAACACAATTGGCAAATGATTACGCTTCTGCCGCG CTGGGTATTGGTAAAGATATGGGGGCGCTGGGCGCGATTTCTTTTGACGTGACTCATGCCCGCTCGCAGTTTGACTACGA CGATAATGAGAGTGGTCAATCGTATCGTTTTCTCTATTCCAAACGTTTTGAAGACACCAATACCACCTTTCGTCTGGTGG GTTATCGCTACTCTATGGAGGGGTTCTACACCCTCAATGAATGGGTGTCGCGACAGGATAATGATTCTGATTTCTGGGTA ACGGGCAACCGTCGCAGCCGCTTCGAAGGCACCTGGACGCAATCTTTCACGCCAGGCTGGGGCAATATTTATTTAACATT CAGTCGACAGGAATACTGGCAGACCGATGAGGTCGAACGTTTATTACAGTTCGGCTATAACAACAACTGGCGAAACATCT CCTGGAACGTTTCCTGGAACTATACGGACTCGATCAAGCGCTCATTGGGCAACCATCATGATGATAACAATGATGATTTC GGCAAAGAACAGATTTTCATGTTCTCAATGTCGATACCGCTATCGTGCTGGATGGAAGACAGCTACGTCAACTATTCGTT AACGCAAAACAACCACCATGAAAGCACGATGCAGGTCGGTCTGAACGGAACGATGCTGGAAGGGCGTAACCTGTCTTATA ACGTACAGGAATCGTGGATGCACTCTCCTGATGACTCCTACAGCGGCAATGCCGGAATGACCTATGACGGGACTTATGGC TCGGTCAATGGTAGCTATTCCTGGAGCCGTGACTCCCAACATTTTGATTATGGCGCCAGAGGCGGCGTGCTGGTGCATAG TGACGGAGTGACCTTCTCGCAGGAACTGGGCGAAACGGTGGCATTGGTCAAAGCGCCGGGCGCAGAAGGCCTGTCCATTG AAAACGCCACCGGGATTTCTACCGACTGGCGTGGTTATACCGTAAAAACGCAGCTTAGCCCGTATGACGAAAACCGCGTG GCATTGAACAGCGACTATTTCTCCAAAGCCAATATTGAACTGGAAAACACCGTCATCAACCTGGTACCAACGCGCGGTGC GGTGGTGAAAGCCGAATTTGTCACCCATGTCGGTTATCGCGTGCTATTTAACGTCCGCCAGGTCAACGGTAAACCAATAA TGTTTGGCGCGATGGCAACCGCCTCTCTCGAAACGGGCACAGTCACCGGGATTGTCGGTGATAACGGCGAACTGTATCTC TCCGGGATGCCTGAAAAAGGCGAGTTTTTATTGAGTTGGGGACAAGCTGCGGATGAAAAATGTAAGGCGGCCTATCACAT CACCCATAAACCTGATGATACCAGCCTGGTTCAAATGGATGCGATTTGTCGCTAA Protein sequence : MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYKVDVMINGMLFERQEVKFAQD NPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVNPVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSR WDQGINAMMMNYDFSASHTIRSNYDDDDDSYYLNLRNGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQIM IGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIYQSAVPQGAFALTDLNTTSSGG DLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIGEVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAA LGIGKDMGALGAISFDVTHARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFWV TGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSWNYTDSIKRSLGNHHDDNNDDF GKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQVGLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYG SVNGSYSWSRDSQHFDYGARGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENRV ALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMATASLETGTVTGIVGDNGELYL SGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQMDAICR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 0.0 | 64 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 63 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ECs4667 | NP_312694.1 | outer membrane usher protein | VFG0454 | Protein | 1e-142 | 41 |
