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Name : ECs4534 (ECs4534) Accession : NP_312561.1 Strain : Escherichia coli Sakai Genome accession: NC_002695 Putative virulence/resistance : Unknown Product : integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 4581059 - 4582240 bp Length : 1182 bp Strand : + Note : similar to CP4-like integrases [Escherichia coli EDL933] gi|3414871|gb|AAC31482.1|, integrases e.g. [Shigella flexneri] gi|5532446|gb|AAD44730.1|AF141323_1 DNA sequence : ATGGCGCTAACCGATGTTAAAGTGAAAACCGCGAAGCCAAAAGAAAGGCCCTATAAGCTGGCTGATGGCGGAGGTATGTA TCTGCTGATTAACGCTAATGGTTCCAAATACTGGCGTATGAAGTACCGCTTCGCCGGTAAAGAAAAGATGCTGTCTATTG GCGTATACCCCGATGTAACGCTTGCCGACGCACGTGAGAAACGCAGTGAAGCCAGGAAAATACTTGCGGCTGGTGGCGAT CCGGGTGAGGCAAAAAAAGAAGAAAAAATAGCGCTGCAAATGAGTTTGAAAAACACTTTCGAGGCCGTTGCTCGCGAGTG GCATCAGACGAAAGCCGATCGCTGGTCACTGCGCTACCGCGATGAAATAATCGACACCTTTGAGAAAGATATCTTCCCCT ACATCGGCAAGCGACCTATTGCCGAAATCAAGCCGATGGAGCTATTGGAAGCACTACGTAAGATGGAGAAACGTGGAGCA CTGGAGAAAATGCGCAAGGTCCGCCAACGTTGTGGTGAGGTGTTTCGCTATGCAATTGTTACTGGTCGAGCCGACTATAA CCCTGCTCCCGATCTTGCCAGTGCTTTAGCTACACCGAAAAAAGTACATTTTCCCTTTCTTACTGCCAATGAACTTCCCC ACTTCCTTACTGATCTGGCGGGTTATACCGGAAGTATCATCACTAAGACAGCTACTCAGATCATTATGTTAACCGGTGTA CGAACGCAAGAGTTGCGTTTCGCGCATTGGGAGGATATTGATTTTGAGGCAAAATTATGGGAGATCCCGGCAGAAGTAAT GAAGATGAAACGGCCTCATATTGTGCCGCCCTCTGAGCAGGTTATTGCGCTATTTAAGCAACTTGAACCAATCTCAAAAC ATCATCCTCTGGTCTTTATCGGTAGGAACGATCCTCGCAAGCCAATTAGTAAGGAGAGCATTAACCAGGTCATTGAATTG CTGGGGTATAAGGGAAGACTCACAGGGCACGGTTTCAGGCATACCATGAGCACAATTCTGCACGAACAAGGCTTTAATTC TGCCTGGATTGAAATGCAGTTGGCTCATGTGGATAAAAACTCCATCAGGGGTACCTATAACCACGCCCAGTATCTCGATG GTCGCCGTGAAATGATGCAATGGTACGCTGACTACATTGATTCACTTTCTGAGCTGGCCTGA Protein sequence : MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKILAAGGD PGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGA LEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV RTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVIALFKQLEPISKHHPLVFIGRNDPRKPISKESINQVIEL LGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSIRGTYNHAQYLDGRREMMQWYADYIDSLSELA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 0.0 | 100 |
| int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 0.0 | 100 |
| intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 0.0 | 100 |
| int | ACU09430.1 | integrase | Not tested | LEE | Protein | 0.0 | 100 |
| int | CAC39282.1 | integrase | Not tested | LPA | Protein | 0.0 | 97 |
| int | AAD44730.1 | Int | Not tested | SHI-2 | Protein | 1e-180 | 96 |
| aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 0.0 | 96 |
| int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 3e-180 | 96 |
| S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 4e-180 | 96 |
| SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 4e-180 | 96 |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 5e-125 | 63 |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 5e-126 | 63 |
| STY4821 | NP_458899.1 | integrase | Not tested | SPI-10 | Protein | 1e-73 | 43 |
| SESS1296_03598 | AFO66301.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 2e-80 | 43 |
| SESS1635_03816 | AFO66367.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 2e-80 | 43 |
| S4822 | NP_838459.1 | P4-type integrase | Not tested | SHI-1 | Protein | 3e-83 | 41 |
| SF2964 | NP_708738.1 | P4-type integrase | Not tested | SHI-1 | Protein | 3e-83 | 41 |
| ECO26_5300 | YP_003232178.1 | integrase | Not tested | LEE | Protein | 4e-83 | 41 |
| int-phe | AAL60261.1 | Int-phe | Not tested | LEE | Protein | 3e-83 | 41 |
| intB | CAD42017.1 | bacteriophage P4 integrase | Not tested | PAI II 536 | Protein | 3e-75 | 41 |
| ECUMN_3322 | YP_002414004.1 | integrase | Not tested | Not named | Protein | 3e-83 | 41 |
| int | AAK16198.1 | Int | Not tested | PAI-I AL862 | Protein | 6e-83 | 41 |
| int | ADD91747.1 | P4 integrase | Not tested | PAI-I AL862 | Protein | 6e-83 | 41 |
| int-phe | AAL57571.1 | CP4-like integrase | Not tested | LEE | Protein | 3e-83 | 41 |
| ECO103_3550 | YP_003223418.1 | integrase | Not tested | LEE | Protein | 4e-83 | 41 |
| int | AAL51028.1 | CP4-like integrase | Not tested | LEE | Protein | 3e-83 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ECs4534 | NP_312561.1 | integrase | VFG0783 | Protein | 0.0 | 100 |
| ECs4534 | NP_312561.1 | integrase | VFG0598 | Protein | 2e-180 | 96 |
| ECs4534 | NP_312561.1 | integrase | VFG0626 | Protein | 1e-83 | 41 |
| ECs4534 | NP_312561.1 | integrase | VFG1536 | Protein | 2e-75 | 41 |
