Gene Information

Name : ECs1772 (ECs1772)
Accession : NP_309799.1
Strain : Escherichia coli Sakai
Genome accession: NC_002695
Putative virulence/resistance : Virulence
Product : colonization factor
Function : -
COG functional category : R : General function prediction only
COG ID : COG4588
EC number : -
Position : 1768219 - 1768977 bp
Length : 759 bp
Strand : +
Note : similar to accessory colonization factor AcfC [Vibrio cholerae] gi|558481|gb|AAA50604.1, Anm (attachment and effacement of negative mutant) protein [Escherichia coli] gi|6715555|gb|AAB48445.2

DNA sequence : 
ATGAGGAACATAATGGCAGGTTTTTTAATATTCCTGTCTTCTGCTGCTTATGCTGATATCAATCTGTATGGTCCTGGTGG
CCCGCATACAGCCTTGCTTGATGCAGCCAAACTTTATGCCGAAAAAACAGGTATTATAGTGAACGTTCATTACGGCCCAC
AGAACAAATGGAATGAAGATGCCAAAAAAAATGCAGATATCTTGTTTGGCGCATCAGAACAATCTGCTCTGGCTATCATT
CGGGACCATAAAGACAGCTTCAGTGAAAAAGATATTCAGCCTCTTTATCTGCGAAAAAGTATTTTACTGGTAAAGAAAGG
TAATCCTAAAAATATCCGGAGTATTGACGACCTGACCAGACCTGGGATTGGCGTAATTGTTAATGATGGTGGTGGTACCA
GTAATACATCAGGCACTGGCGTCTGGGAAGATATTGCCGGACGTAAAGGGAATATAGAAACTGTCGCCGCAATCCGAAAA
AATATTATTTTATATGCGCCCAATAGCGGAACTGCACGTAAGGCTCTTGAGAATCAGCCTGGAGCAGATGTCTGGATAAC
CTGGGCTGACTGGGCAGCCAGTAATCCAGAAATTGGTGATGTCGTGGAAATAGCGCCAGACTACGTGATATGGCGTGATA
TGAACATTACAGTACGTCAGGATGCAAATGATGAAACCCGTCGATTTGCAGAATGGCTACAAACCGATGAAGCGGCGCCT
GCATTCAAAAAATATGGCTGGACCAGGAAAGGCACTTGA

Protein sequence : 
MRNIMAGFLIFLSSAAYADINLYGPGGPHTALLDAAKLYAEKTGIIVNVHYGPQNKWNEDAKKNADILFGASEQSALAII
RDHKDSFSEKDIQPLYLRKSILLVKKGNPKNIRSIDDLTRPGIGVIVNDGGGTSNTSGTGVWEDIAGRKGNIETVAAIRK
NIILYAPNSGTARKALENQPGADVWITWADWAASNPEIGDVVEIAPDYVIWRDMNITVRQDANDETRRFAEWLQTDEAAP
AFKKYGWTRKGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
acfC AAK20768.1 accessory colonization factor AcfC Virulence VPI Protein 1e-55 50
acfC AAK20798.1 accessory colonization factor AcfC Virulence VPI Protein 1e-55 50
acfC AAA82706.1 AcfC Virulence VPI Protein 1e-55 50
VC0841 NP_230489.1 accessory colonization factor AcfC Virulence VPI-1 Protein 2e-55 50
acfC YP_001216322.1 accessory colonization factor AcfC Virulence VPI-1 Protein 2e-55 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECs1772 NP_309799.1 colonization factor VFG0839 Protein 2e-107 100
ECs1772 NP_309799.1 colonization factor VFG0105 Protein 8e-56 50