Gene Information

Name : msr5972 (msr5972)
Accession : NP_106546.1
Strain : Mesorhizobium loti MAFF303099
Genome accession: NC_002678
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 4833998 - 4834294 bp
Length : 297 bp
Strand : +
Note : -

DNA sequence : 
GTGGGAATGCAAAGAAGGAAGTTCAGCCGCGAGTTCAAGCTTGAGGCGGTGAGATTGATCAAGGATCGGGGCGTTGCGGT
GGCCCAGGCTGCCCGCGACCTCGATGTCCACGAGAACGTGCTGCGCAAATGGGTGCGCGATCTGTCGACGGATCCTCAGC
ATGCGTTTCCCGGCCACGGGCAGATGAAGCCGGAGCAGCTCGAGATTGACCGGCTGCGCAAGGAAGTGGCGAAGCTGAAG
GCGGAGCGCGACATCCTAAAAAAGGCCGCAGCCTACTTCGCGAGGGAAGTGACATGA

Protein sequence : 
MGMQRRKFSREFKLEAVRLIKDRGVAVAQAARDLDVHENVLRKWVRDLSTDPQHAFPGHGQMKPEQLEIDRLRKEVAKLK
AERDILKKAAAYFAREVT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AGK06948.1 IS1359 transposase; OrfA Not tested SGI1 Protein 9e-14 43
orfA AGK06994.1 IS1359 transposase; OrfA Not tested SGI1 Protein 9e-14 43
orfA AGK07052.1 IS1359 transposase; OrfA Not tested SGI1 Protein 9e-14 43
VC1790 NP_231425.1 transposase OrfAB subunit A Not tested VPI-2 Protein 1e-13 43
orfA YP_001217330.1 transposase OrfAB subunit A Not tested VPI-2 Protein 1e-13 43
orfA ACX47959.1 IS1359 transposase; OrfA Not tested SGI1 Protein 9e-14 43
VPI2_0009c ACA01826.1 transposase OrfAB subunit A Not tested VPI-2 Protein 9e-14 43
orfA AGK06911.1 IS1359 transposase; OrfA Not tested SGI1 Protein 9e-14 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
msr5972 NP_106546.1 transposase VFG1123 Protein 4e-14 43