Gene Information

Name : yfeD (PM0397)
Accession : NP_245334.1
Strain : Pasteurella multocida Pm70
Genome accession: NC_002663
Putative virulence/resistance : Virulence
Product : protein YfeD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 465768 - 466607 bp
Length : 840 bp
Strand : -
Note : -

DNA sequence :
ATGGCTGATATCATCAATTGGTTTGTTGAACCTTTCTTGTATCCTTTTATGCAAAATGCCCTCTTCACCGCACTGATCGT
TGCGATTATATGTGCGGTGCTTTCCTGCTATTTAGTCTTAAAAGGTTGGTCATTAATGGGCGATGCAATTTCACATGCTG
TCTTGCCGGGAATTGTCATTGCATTTATGCTTGGTTTACCACTCACTTTTGGCGCATTTGGTGCAGGCTTATTTTGTGCA
TTAAGCGTCGGTTATCTGAAAGAAAATAGCCGTATTAAAGAAGATACCGTAATGGGGATTGTTTTTTCTGGGATGTTTGC
CTTTGGTATCGTTTTGTTTACCAAAGTCGAAACAGAACAGCACCTTACCCACATTTTATTTGGTAATCTGTTGGGTGTTA
GTCGTGCTGAATTAGTACAAACTTTTATTATTGCAACAATCATTTTTGTCATCATGATGCTTAAACGTCGTGACTTCTTG
CTTTATTGTTTTGATCAAAGTCATACCCGCGTCGCAGGGCTTTCACCTCGGCTATTACACTATGGCTTACTGGTCTTACT
TGCCTTAACCATTATCATGGCGATGCAAGTGGTCGGGGTGATTTTAGTGGTTGCTATGTTAATTTCACCGGGTATCACTG
CTTTTTTATTAAGTAAGCGTTTCGACATCATGCTCATCATTGCAATTTGTATGTCTGTCATCACCAGTATTTTTGGGACG
ATTATTAGTTATCATATTGACGCAGCAACAGGACCTTGCATTATTTTATTACAAGCCATGTTCTTTACGCTCGCATTAGG
ATATCAAAAAGTAAAATGGCACATACAAAAGCCAATTTAA

Protein sequence :
MADIINWFVEPFLYPFMQNALFTALIVAIICAVLSCYLVLKGWSLMGDAISHAVLPGIVIAFMLGLPLTFGAFGAGLFCA
LSVGYLKENSRIKEDTVMGIVFSGMFAFGIVLFTKVETEQHLTHILFGNLLGVSRAELVQTFIIATIIFVIMMLKRRDFL
LYCFDQSHTRVAGLSPRLLHYGLLVLLALTIIMAMQVVGVILVVAMLISPGITAFLLSKRFDIMLIIAICMSVITSIFGT
IISYHIDAATGPCIILLQAMFFTLALGYQKVKWHIQKPI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 8e-59 52
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-58 52
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-58 52
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-58 52
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-58 52
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-46 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-46 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-46 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-46 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-46 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD NP_245334.1 protein YfeD BAC0442 Protein 1e-79 65
yfeD NP_245334.1 protein YfeD BAC0352 Protein 5e-59 52
yfeD NP_245334.1 protein YfeD BAC0441 Protein 5e-41 44
yfeD NP_245334.1 protein YfeD BAC0351 Protein 7e-47 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD NP_245334.1 protein YfeD VFG0528 Protein 5e-59 52
yfeD NP_245334.1 protein YfeD VFG0527 Protein 6e-47 41