Gene Information

Name : tra904H (L0464)
Accession : NP_268230.1
Strain : Lactococcus lactis IL1403
Genome accession: NC_002662
Putative virulence/resistance : Unknown
Product : transposase of IS904H
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2154611 - 2155372 bp
Length : 762 bp
Strand : -
Note : evidence experimental PMID:1328163; transposon related function; IS3/IS150/IS904 family transposase

DNA sequence :
ATGCATCGTCGTCCTTCAAAACAACAAGTGGAGAGAGAAATTCTCTCAGAGAAGATAAAAGCTGTCTTTCATGAGCATAA
GGGACGCTATGGTGCGGTTAGAATTACCAAGGTACTTCATAATACTGGTATTATGACCAACACGAAACGTGTTGGGAAAC
TGATGCACTTGATGGGACTTTATGCCAAGGGAAGCCGTTATAAATATAAACATTACAACAGAAAAGGAGCTTCGCTTTCA
AGACCCAATTTAATTAATCAGATCTTTAAAGCAACAGCTCCTAATAAAGTATGGCTGGGAGACATGACCTATATCCCTAC
CAAAGAAGGCACCTTATACTTAGCCGTGAATATCGACGTTTTTTCACGTAAGATTGTAGGCTGGTCAATGTCTTCACGGA
TGCAAGATAAACTGGTGAGGGATTGCTTCTTACAAGCTTGTGGGAAAGAACATCCTCAGCCTGGCTTGATTGTCCATACT
GATCAAGGGAGTCAATATACAAGCTCTCGTTATCAATCTACTCTTCGTCAAGTCAGTGCTCAATCTAGCATGAGTCGTAA
AGGAAATCCCTATGACAATGCAATGATGGAGTCTTTTTATAAGACGCTAAAGAGGGAGCTTATTAATGATGCTCATTTTG
AGACAAGAGCTGAGGCTACTCAAGAAATATTTAAATACATTGAGACCTATTACAATACAAAAAGGATGCATTCAGGTCTT
GATTACAAGTCTCCAAAAGACTTTGAAAAATATAATTCTTAA

Protein sequence :
MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGIMTNTKRVGKLMHLMGLYAKGSRYKYKHYNRKGASLS
RPNLINQIFKATAPNKVWLGDMTYIPTKEGTLYLAVNIDVFSRKIVGWSMSSRMQDKLVRDCFLQACGKEHPQPGLIVHT
DQGSQYTSSRYQSTLRQVSAQSSMSRKGNPYDNAMMESFYKTLKRELINDAHFETRAEATQEIFKYIETYYNTKRMHSGL
DYKSPKDFEKYNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-33 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-33 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 7e-33 42
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 1e-34 41
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 2e-34 41
unnamed AAF09022.1 unknown Not tested SHI-O Protein 7e-35 41
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-34 41
unnamed AAF09030.1 unknown Not tested SHI-O Protein 2e-34 41
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 2e-34 41
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-34 41
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 2e-34 41
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-37 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-37 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-37 41
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 2e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tra904H NP_268230.1 transposase of IS904H VFG1706 Protein 8e-35 41
tra904H NP_268230.1 transposase of IS904H VFG1631 Protein 1e-32 41