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Name : join (Z1288m) Accession : NP_286815.1 Strain : Escherichia coli EDL933 Genome accession: NC_002655 Putative virulence/resistance : Virulence Product : PapC-like porin protein involved in fimbrial biogenesis Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 1217911 - 1220510 bp Length : 2600 bp Strand : + Note : - DNA sequence : ATGTATAGAACTCACCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGT GTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCAGCCTTTTTCAAAGATGATCCCTCAATGGTGGCCGATT TGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGAT ACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATGCAAT GGGCGTGAATACTGATGCATTTCCGGCTTTTAAACAACTGGACAAACAAGCGTGTGCGCCATTGGCGGAGATTATTCCGG ATGCCAGCGTAACTTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATTGCCATCAAAAGTAATGCTCGT GGTTATGTCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCATTTAGCGGGGCTAACAGTATT CATAGCAGCGCAGACAGTGATTCTGGCGACAGTTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGATT GCGCAACAATTCAACATGGAGTCGTAGTAGTGGCCAAACCGCAGAATGGAAGAATCTCAGCAGCTATTTGCAACGGGCGG TTATTCCTCTGAAAGGCGAACTGACCGTAGGTGATGATTATACTGCAGGCGATTTTTTCGATAGTGTCAGCTTTCGTGGT GTGCAGCTGGCGTCAGATGACAACATGCTGCCAGACAGCCTGAAAGGGTTTGCGCCTGTGGTGCGTGGTATCGCCAAAAG CAATGCCCAGATAACGATTAAGCAAAATGGTTACACCATTTACCAAACTTATGTATCGCCTGGTGCTTTTGAAATTAGTG ATATCTATTCCACGTCGTCGAGCGGTGATTTGTTAGTTGAAATCAAAGAAGCGGACGGCAGCGTCAATAGCTACAGCGTA CCCTTTTCCAGCGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAG TAATGAACAGCAGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTG GACAATATGCTGAATATTACCGTGCCGCCATGTTTGGTCTGGGATTTAACCTCGGCGATTTCGGAGCAATTTCGTTCGAT GTGACCCAGGCGAAGAGTACGCTGGCAGACCAAAGCGAACATAAAGGTCAGTCATATCGTTTTCTGTATGCCAAAACGCT CAACCAATTGGGTACTAACTTTCAATTGATGGGCTATCGCTATTCGACGTCGGGTTTCTACACCCTTTCCGACACCATGT ATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTT TACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGCAATTAAGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCA GCAAACTTACTGGCATACCGATCAACAGGATCGGCTATTACAGTTTGGCTATAACACGCAAATTAAAGATCTCTCGCTGG GGATCTCCTGGAACTACAGTAAGTCCCGTGGCCAACCTGATGCTGATCAGGTGTTTGCACTTAATTTTTCCCTGCCACTC AATCTGTTGCTCTCCAGAAGTAATGATAGCTATACCAGCAAAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGA TAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACACTACTCGATGACGGTAACCTGAGCTACAGCGTGCAAC AGGGATATAACAGCGAGGGGAAAACGGCTAATGGCAGCGCCAGCATGGACTACAAAGGGGTGTTTGCAGATGCCCGAGTG GGCTACAACTACAGCGATAACGGCAGTCAACAACAACTGAACTACGCTCTTTCAGGCAGTTTAGTTGCCCATTCACAGGG CATTACCCTGGGGCAATCACTGGGGGAAACTAACGTTCTGATTGCAGCACCAGGCGCAGAGAATACTCGTGTGGCGAACA GCACCGGGCTGAAAACTGACTGGCGCGGATATACCGTTGTTCCTTATGCCACTTCTTATCGTGAAAATCGAATCGCACTT GATGCGGCGTCGTTAAAACGTAACGTGGATCTTGAAAATGCAGTAGTCAACGTGGTTCCCACCAAAGGGGCGTTGGTTCT GGCGGAGTTCAATGCCCATGCGGGAGCAAGGGTATTAATGAAAACATCAAAGCAGGGTATATCGCTGCGTTTTGGCGCGA TAGCGACGCTGGACGGCGTACAGACTAATAGCGGCATAATTGATGATGATGGCTCGCTCTATATGGCGGGTTTACCGGCG AAGGGAACAATAACCGTGCGCTGGGGCGAAGCTCCCGATCAAATTTGTCATATCAGTTACGAGCTTACCGAACAACAAAT TAACTCTGCGATTACGCGAATGGATGCCATATGCAGATAA Protein sequence : MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEIS DIYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWYGG GQYAEYYRAAMFGLGFNLGDFGAISFDVTQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLSEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL GISWNYSKSRGQPDADQVFALNFSLPLNLLLSRSNDSYTSKKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQ QGYNSEGKTANGSASMDYKGVFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGISLRFGA IATLDGVQTNSGIIDDDGSLYMAGLPAKGTITVRWGEAPDQICHISYELTEQQINSAITRMDAICR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 0.0 | 47 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| join | NP_286815.1 | PapC-like porin protein involved in fimbrial biogenesis | VFG0876 | Protein | 0.0 | 48 |
| join | NP_286815.1 | PapC-like porin protein involved in fimbrial biogenesis | VFG0446 | Protein | 3e-179 | 48 |
| join | NP_286815.1 | PapC-like porin protein involved in fimbrial biogenesis | VFG0454 | Protein | 2e-169 | 45 |
| join | NP_286815.1 | PapC-like porin protein involved in fimbrial biogenesis | VFG1645 | Protein | 0.0 | 45 |
| join | NP_286815.1 | PapC-like porin protein involved in fimbrial biogenesis | VFG0912 | Protein | 0.0 | 45 |
