Gene Information

Name : sctR (TC_0851)
Accession : NP_297224.1
Strain : Chlamydia muridarum Nigg
Genome accession: NC_002620
Putative virulence/resistance : Virulence
Product : type III secretion inner membrane protein SctR
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 987356 - 988291 bp
Length : 936 bp
Strand : +
Note : identified by match to PFAM protein family HMM PF03806

DNA sequence : 
ATGCGATTGATTTGTCGAATTTTCTTCTTTCTATGCGTACTTAGTGCTCCCCAGGGCTTTTCCAACGTCTGTTCTGATGC
TTCCTGTTCTAAAGTACAGGGATCCTCTTCTTGCCGACCATGTGGGGCTACTCCTCAACAGGAGATTCAGGATTCTCCAG
GAACCCCACCCCCCCCCTTTCGCTGTCCATCTTACAGACAACCAGTAGAAGCTCAGGATCTCCTTGCTTCTCAAGAAGAT
CTTTCTTCCGGAGCCTTTTCAGACACGTATCCAGATTTAACCACACAAGCGGTTATTATATTATTCCTTGCGCTTTCTCC
CTTTCTGGTTATGCTTCTGACCTCCTATCTGAAGATTATTATCACGTTAGTCCTACTCAGAAATGCCTTGGGAGTACAAC
AAACTCCTCCTAGCCAAGTCCTCAACGGGATTGCCTTGATTCTGTCTATCTATGTCATGTTCCCTACTGGAATGGCTATG
TATAACGACGCTAAAAAAGGCATTGAATCTGATGCCGTTCCTCGAGACCTTTTTTCTGCAGAGGGGGCGGAAACGGTATT
TGTTGCCTTAAATAAATCGAAAGAACCTCTTCGTTCTTTCCTAATTAACAACACCCCTAAACCACAAATTCAAAGTTTTT
ATAAAATTTCACAGAAAACATTCCCTCCGGAACTTCGCCAACAATTGACCCCTTCTGATTTTGTAGTCGTCATTCCTGCT
TTCATCATGGGCCAAATTAAGAATGCTTTTGAAATTGGGGTTTTGATTTATTTGCCTTTCTTTGTCATCGATTTGGTAAC
CGCAAACGTTTTGGTTGCTATGCAGATGATGATGCTTTCTCCACTGTCCATCTCTCTTCCTCTTAAGCTTCTTCTTGTGG
TCATGGTAGATGGATGGACCTTACTACTCGAAGGATTGATGATTAGTTTTAAATAA

Protein sequence : 
MRLICRIFFFLCVLSAPQGFSNVCSDASCSKVQGSSSCRPCGATPQQEIQDSPGTPPPPFRCPSYRQPVEAQDLLASQED
LSSGAFSDTYPDLTTQAVIILFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGMAM
YNDAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFPPELRQQLTPSDFVVVIPA
FIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-24 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-24 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-31 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctR NP_297224.1 type III secretion inner membrane protein SctR VFG2131 Protein 2e-115 88
sctR NP_297224.1 type III secretion inner membrane protein SctR VFG2016 Protein 2e-22 42