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Name : sctV (TC_0365) Accession : NP_296743.1 Strain : Chlamydia muridarum Nigg Genome accession: NC_002620 Putative virulence/resistance : Virulence Product : type III secretion inner membrane protein SctV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 424400 - 426526 bp Length : 2127 bp Strand : - Note : similar to GB:M26664, GB:L05512, GB:L04132, SP:P15515, SP:P15516, PID:184054, and PID:292144; identified by sequence similarity; putative DNA sequence : ATGAACAAGCTACTCAATTTTGTCAGTAGAACATTCGGGGGAGACGCGGCCCTGAACATGATAAACAAGTCCAGCGACCT CATCCTTGCTATGTGGATGTTGGGCGTGGTCTTGATGATCATTATGCCATTGCCTCCAGTTATGGTGGATTTCATGATCA CCATCAACTTGGCAATCTCCGTATTCCTGCTGATGGTTGCCTTATATATTCCTAGCGCATTGCAACTCTCGGTTTTCCCT TCCCTACTCCTAATCACCACAATGTTCCGATTAGGAATTAACATCTCTTCTTCCAGACAAATTCTCCTTCATGCTTATGC AGGGAACGTGATTCAGGCCTTCGGGGACTTCGTCGTTGGAGGAAACTATGTCGTTGGATTTATTATCTTCCTAATCATCA CCATCATACAGTTTATTGTGGTTACTAAAGGTGCGGAAAGGGTCGCTGAGGTTGCTGCTCGATTCCGATTAGATGCGATG CCTGGTAAACAGATGGCTATTGATGCTGACCTTCGTGCGGGGATGATTGATGCCACACAAGCTCGCGATAAACGAGCTCA AATTCAGAAGGAAAGTGAACTTTACGGAGCCATGGACGGAGCCATGAAGTTCATCAAAGGAGACGTTATTGCCGGTATCG TCATCTCCTTGATTAACATCGTCGGAGGGTTAGTCATTGGTGTCACAATGAAAGGCATGACAATGGCTCAAGCTGCTCAC ATTTACACCCTCATTACTATTGGGGATGGATTAGTTTCCCAAATTCCCTCCCTATTGATCTCTTTAACCGCTGGTATCGT AACTACTCGAGTATCTAGTGATAAAGATACAAACCTCGGGAAAGAAATTTCTAGCCAGTTGGTTAAAGAACCTAGAGCCT TACTCCTCTCTGCGGTAGCTACCTTAGGAATCGGTTTTTTTAAAGGATTCCCTTTATGGTCATTTGCCCTAATGGCTGTT GTTTTTGCAGTATTAGGTATTTTGTTAATCACCAAGAAAAATTCTCCTGGCAAAAAGGGAAGTTCCAGTTCTTCTACTAC CGTAGGTGCTGCTGACGGAGCATCGGCCTCAGGAGAAAACTCCGATGATTATGCGCTTACTCTTCCTGTAATTCTCGAAC TTGGTAAAGATCTTTCCAAACTTATTCAGCAAAGAACAAAATCAGGGCAAAGCTTTGTGGATGATATGATTCCTAAAATG CGCCAAGCTCTTTATCAAGATATTGGAATTCGCTATCCAGGAATCCACGTACGAACAGATTCCCCTTCTTTAGAAGGGAA TGATTATATGATTCTTCTTAACGAAGTCCCCTATGTTCGAGGGAAAATTCCTCCTAACCACGTTTTAACAAACGAAGTGG AAGAAAACCTTTCTCGTTATAATCTACCTTTTATCACTTACAAAAATGCTGCAGGTTTGCCTTCAACTTGGGTCAGCACC GATGCTCTTACTATTTTAGAAAAAGCAGCTATTAAGTACTGGTCTCCTTTGGAAGTGATTATTCTTCATCTTTCTTACTT CTTCCATAGAAACTCTCAAGAGTTTCTAGGAATTCAGGAAGTTCGTTCTATGATTGAATTTATGGAACGATCTTTCCCTG ATCTTGTTAAAGAAGTTACACGCCTTATTCCTCTGCAGAAGCTTACAGAAATTTTCAAGCGTTTAGTTCAGGAGCAAATT TCCATCAAAGATTTGCGAACCATTTTAGAATCTTTAAGCGAATGGGCCCAAACTGAGAAAGATACTGTATTACTGACAGA GTATGTACGTTCTTCCTTGAAACTTTATATCAGCTTCAAATTTTCTCAAGGGCAATCAGCAATTTCAGTCTACCTGTTAG ATCCTGAAATTGAAGAGATGATTCGTGGCGCTATTAAACAAACTTCTGCGGGCTCTTATTTGGCCTTAGATCCAGATTCC GTAAACCTCATTTTAAAATCCATGCGAATGACTATTACCCCAACACCTCCTGGAGGCCAACCCCCAGTACTGTTGACAGC AATTGACGTCAGACGCTATGTACGAAAATTAATAGAGACAGAATTTCCTGATATTGCTGTGATTTCTTATCAAGAGGTCT TACCTGAAATTAGAATCCAGCCTTTAGGAAGAATTCAAATTTTCTAA Protein sequence : MNKLLNFVSRTFGGDAALNMINKSSDLILAMWMLGVVLMIIMPLPPVMVDFMITINLAISVFLLMVALYIPSALQLSVFP SLLLITTMFRLGINISSSRQILLHAYAGNVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAARFRLDAM PGKQMAIDADLRAGMIDATQARDKRAQIQKESELYGAMDGAMKFIKGDVIAGIVISLINIVGGLVIGVTMKGMTMAQAAH IYTLITIGDGLVSQIPSLLISLTAGIVTTRVSSDKDTNLGKEISSQLVKEPRALLLSAVATLGIGFFKGFPLWSFALMAV VFAVLGILLITKKNSPGKKGSSSSSTTVGAADGASASGENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIPKM RQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKIPPNHVLTNEVEENLSRYNLPFITYKNAAGLPSTWVST DALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQI SIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDPDS VNLILKSMRMTITPTPPGGQPPVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIRIQPLGRIQIF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 4e-140 | 46 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-95 | 41 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-95 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctV | NP_296743.1 | type III secretion inner membrane protein SctV | VFG2126 | Protein | 0.0 | 99 |
| sctV | NP_296743.1 | type III secretion inner membrane protein SctV | VFG0064 | Protein | 1e-140 | 46 |
| sctV | NP_296743.1 | type III secretion inner membrane protein SctV | VFG0384 | Protein | 4e-138 | 45 |
