Gene Information

Name : gmd (VNG0065G)
Accession : NP_279223.1
Strain : Halobacterium salinarum NRC-1
Genome accession: NC_002607
Putative virulence/resistance : Virulence
Product : GDP-D-mannose dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 63881 - 64810 bp
Length : 930 bp
Strand : +
Note : Gmd

DNA sequence : 
ATGCCGACTGCACTCGTGACCGGTGTCGCGGGATTCATTGGGTCACATCTCGCGGCCGCGCTTCTGGACCGCGGCTACGA
CGTTCGGGGCGTCGACAACTTTGCCACGGGGCACGACCAGAACCTCGAACCACTCCGTGGTACCGGAGATTTCTCGTTCT
ACGAGGCGGACATTCGCGACGCTGATCTCGTCGCTGATGTCACAAATGGTGTCGACTACGTCTTCCACCAGGCCGCAGAT
TCCTCCGTCCCGCGCAGCGTCGAGGACCCCGTCACTACGACTGACGTCAACTGCACGGGGACAGCCACTGTCATCGACGC
CGCCCGCGAGGCTGACGTTGATACCGTTGTCGTCGCCTCCTCCGCTGCAATTTACGGCTCCACTGAAACATTCCCGAAGG
TCGAGTCGATGACCGAGCAACCCGAATCGCCGTATGCGCTCTCGAAGCACTACACGGAGAAGCTAGCACTTCAGGCCAGC
GAGCTCTACGACATCGACACGGCCGCGCTCCGCTACTTCAACATCTATGGGCCACGCCAGGATCCGAATGGTGACTACGC
TGCGGTCATCCCGAAGTTCATCTCGCTGATGCTGGACGGCGAGCGCCCGGTCATCTATGGGGACGGCGAGCAGTCCCGTG
ATTTCACGTTCATCGACAACGCCATCCAGGCGAACATCCGCGCCGCCGAAGGTGATGTCACCGGCGAGGCGTTCAACGTC
GGCTGTGGTGGCCGCGTCACCGTCAACGAGCTCGTCGACGTGCTCAACGACCTCCTCGACACGGACATCGACCCCATCTA
TGACGACCCACGGCCGGGCGACGTGCGGCACTCTCACGCTGACATCTCGAAGGCCCGCGAGCTTCTGAGCTACGAGCCCG
AGGTGGGGTTCTCTGAGGGACTCGAGCAGACGATTCCGTACTATCGGTAG

Protein sequence : 
MPTALVTGVAGFIGSHLAAALLDRGYDVRGVDNFATGHDQNLEPLRGTGDFSFYEADIRDADLVADVTNGVDYVFHQAAD
SSVPRSVEDPVTTTDVNCTGTATVIDAAREADVDTVVVASSAAIYGSTETFPKVESMTEQPESPYALSKHYTEKLALQAS
ELYDIDTAALRYFNIYGPRQDPNGDYAAVIPKFISLMLDGERPVIYGDGEQSRDFTFIDNAIQANIRAAEGDVTGEAFNV
GCGGRVTVNELVDVLNDLLDTDIDPIYDDPRPGDVRHSHADISKARELLSYEPEVGFSEGLEQTIPYYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 2e-44 42
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 2e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gmd NP_279223.1 GDP-D-mannose dehydratase VFG0430 Protein 9e-45 42