Name : lysS (BU437) Accession : NP_240249.1 Strain : Buchnera aphidicola APS Genome accession: NC_002528 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 476393 - 477913 bp Length : 1521 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTGAAATAGAAAAAAGAAATCATGGTGATTGTAATATTTTATACAAAGAAATAAAAAAAAGAGAACAAAAACTTGT TAATATGAAAAAAGAAGGATTTTCTTTCCCGAATAGTTTTAAAAAAAATACTACTTCAAGAAAAATTTATCAAAAATACC AAACAAAAAATAGAAATGAACTCATATCATTAAATATTGAAGTTTCCATTGCTGGTCGTATGGTGCAAAGACGTATTATG GGAAAAGCTTCTTTTTTTACCTTGCAAGATATAGAAGGAAAAATACAAATTTATATAAATGAAAAAAAAATATCATCTGA TTTTTATCGCTTTCACTTTAAAAAGTGGGATATCGGAGATATTTTGGGTGTGATAGGAACATTATTTAAAACTAAAACAG GTGAATTATCTATTTATTGTAAAAATGTAACAATACTTAATAAATCATTAAAACCTTTACCAGACAAGTTTCATGGTTTA TCTAATCAAGAAATACGTTATCGGAAAAGATATCTAGATTTAATTAGTAATAATAAATTATATAGTATTTTTAAAAATCG TTCTAATATTATCACAGCGATTCGTAATTTCATGATAGAAAATGATTTTTTAGAAGTCGAAACTCCAATGCTACAAAATA TTCCTGGAGGAGCTAATGCTCGTCCTTTTATTACTTATCATAATGAAATTGATTCTCAAATGTATTTAAGAATAGCTCCT GAATTATATTTAAAAAAACTAATTATTGGGGGCTTTGAACGTATTTTTGAACTGAATAGAAACTTTCGTAACGAAGGAGT ATCAGCTCGTCATAATCCAGAATTTACTATGATGGAAGCATACATTGCATATTCTAACTATGAAGATATGATGGAATTAA CAGAAAATCTTTTTAAAAGTATTACAAAGTTTCTTTTTCAAGATAATAAAATTATATTCAACAACAATAATTTTGATTTC AGTCAACCATTTCGTAGATTAACTATGACAGATTCTATTCTTGAATTTAATTCAACTATTACCTCATCCGATTTAAAAGA TTTTTATAAAATCAGAGAATTTGCAAAATCTATAGGAATAAAAGTAGAAAAAAAATGGGGTTGCGGCCAGATAGAAACTG AAATATTTGAAAAGACAGTAGAAAAAAAATTAATTCAACCAACTTTTATTACACAATACCCAGTAGAAGTTTCTCCATTG GCAAGACGTAATGACATAAATTTAAATATAACTGATAGATTTGAACTTTTTATTGGTGGATATGAAATAGGAAATGGATT TTCAGAACTAAATGATGTAGAAGATCAAAAAACACGATTTTTAAATCAAATTCAAAAATCAAATAAGGAAGATAATAAAA ATCTATTTTACGATAAAGAGTATATAGAAGCGTTAAAATATGGTTTACCTCCAACATCTGGATTAGGAATAGGAATAGAT CGTTTAATTATGATATTAACTAATCAAATCAGCATTCGTGATGTAATTTTATTTCCAACACTTCGTCCATTTAAAAAATA G Protein sequence : MSEIEKRNHGDCNILYKEIKKREQKLVNMKKEGFSFPNSFKKNTTSRKIYQKYQTKNRNELISLNIEVSIAGRMVQRRIM GKASFFTLQDIEGKIQIYINEKKISSDFYRFHFKKWDIGDILGVIGTLFKTKTGELSIYCKNVTILNKSLKPLPDKFHGL SNQEIRYRKRYLDLISNNKLYSIFKNRSNIITAIRNFMIENDFLEVETPMLQNIPGGANARPFITYHNEIDSQMYLRIAP ELYLKKLIIGGFERIFELNRNFRNEGVSARHNPEFTMMEAYIAYSNYEDMMELTENLFKSITKFLFQDNKIIFNNNNFDF SQPFRRLTMTDSILEFNSTITSSDLKDFYKIREFAKSIGIKVEKKWGCGQIETEIFEKTVEKKLIQPTFITQYPVEVSPL ARRNDINLNITDRFELFIGGYEIGNGFSELNDVEDQKTRFLNQIQKSNKEDNKNLFYDKEYIEALKYGLPPTSGLGIGID RLIMILTNQISIRDVILFPTLRPFKK |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-128 | 53 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
lysS | NP_240249.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-128 | 53 |