|
Name : PA4457 (PA4457) Accession : NP_253147.1 Strain : Pseudomonas aeruginosa PAO1 Genome accession: NC_002516 Putative virulence/resistance : Virulence Product : arabinose-5-phosphate isomerase KdsD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : - Position : 4989305 - 4990285 bp Length : 981 bp Strand : + Note : class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in (if known). DNA sequence : TTGAACATGAGCCAGAACCTCGATTTCATCCATTCCGCCCAGCGCACCATCGGCCTCGAGCGCGACGCGGTAGACAGCCT GCTGGCGCGGATTGGCGACGATTTCGTCAAGGCCTGCGAACTGCTGCTGGCCGGCAAGGGCCGGGTCGTCGTCGTCGGCA TGGGCAAATCCGGCCACGTCGGCAAAAAGATCGCCGCTACCCTGGCCAGCACCGGCACCCCCTCCTTCTTCGTGCATCCG GCCGAGGCCAGCCATGGCGACATGGGCATGATCACCAAGGACGACGTGGTCCTCGCCCTGTCCAACTCCGGCTCGACTGC CGAAATCGTCACCCTGTTGCCTCTGATCAAGCGCCTGGGCATCACCCTGATCAGCATGACCGGTAACCCCGAGTCGCCCC TGGCCAAGGCTGCGGAAGTGAACCTGGACGCCAGTGTCGGCCAGGAAGCCTGCCCACTGAACCTGGCCCCGACCTCCTCC ACCACCGTAACCCTGGTCCTCGGCGACGCCCTGGCGATCGCCCTGCTCGAAGCCCGCGGCTTTACCGCGGAAGACTTCGC CTTCTCGCACCCGGGCGGTGCGCTGGGCCGCCGACTGCTGCTGAAGGTGGAAGACGTCATGCACGTCGGCGAAGGGCTGC CGCAGGTGCTGCTCGGCACCTCGCTGACCGGCGCGCTGATGGAAATGACCCGCAAGGGCCTGGGCATGACCGTAGTGCTC GACGAACATGGCAAGCTTGCCGGCATTTTCACCGATGGCGACCTGCGTCGCGCCCTGGATCGGGGCATCGACGTCCGCCA GGTCACCATCGACCAGGTGATGACCGTCCACGGCAAGACCGTCCGCGCCGAGATCCTCGCCGCGGAAGCCCTGAAGATCA TGGAAGACAACAAGATCGGCGCACTGGTGGTGGTCGACGCGGACGACCGTCCGGTCGGCGCCCTGAACATGCACGACCTG TTGCGCGCAGGAGTGATGTAA Protein sequence : MNMSQNLDFIHSAQRTIGLERDAVDSLLARIGDDFVKACELLLAGKGRVVVVGMGKSGHVGKKIAATLASTGTPSFFVHP AEASHGDMGMITKDDVVLALSNSGSTAEIVTLLPLIKRLGITLISMTGNPESPLAKAAEVNLDASVGQEACPLNLAPTSS TTVTLVLGDALAIALLEARGFTAEDFAFSHPGGALGRRLLLKVEDVMHVGEGLPQVLLGTSLTGALMEMTRKGLGMTVVL DEHGKLAGIFTDGDLRRALDRGIDVRQVTIDQVMTVHGKTVRAEILAAEALKIMEDNKIGALVVVDADDRPVGALNMHDL LRAGVM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 3e-49 | 47 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 2e-49 | 47 |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 4e-49 | 47 |
