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Name : PA1938 (PA1938) Accession : NP_250628.1 Strain : Pseudomonas aeruginosa PAO1 Genome accession: NC_002516 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 2118926 - 2119747 bp Length : 822 bp Strand : + Note : Product name confidence: class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences) DNA sequence : GTGGTCTGTTCAGCTTTCGATGTGGCGCGGTCTTGCTACTACGTCCACCGTCTTCGACGGCGGCGTGTCGATGCTCGCCG CGTGGCGCTACGCAGCCAAGTCAACCAGTTGTTCAGCCAGAGTCGGGGCTCGGCCGGCAGCCGCAGCATTCTGGGCATGC TGCGCGAAGAGGGCGTGACCATCGGCCGTTTCCGAGTGCGTCGGTTGATGCGTGAGCTGGGCCTGGTTAGCAAGCAACCG GGCTCGCACGCCTACAAACAGGCCACGGTTGAGCGGCCGGATATCCCGAATCGGCTGAACCGCGAATTCGCGACCGAGCA TCCCAATCAGGTGTGGTGTGGCGACATCACCTACGTCTGGGCGCAAGGCCGTTGGCACTACCTGGCCGCGGTGCTGGATC TGCATACCCGGCGGGTGATCGGCTGGGCGTTCTCGGCCAAGCCGGATGCCGAACTGGTGATCAAGGCCCTGGACATGGCC TACGAACAGCGCGGCAAGCCACAGCAGGTGCTGTTCCATTCAGACCAGGGCAGCCAGTACGCCAGCCGCCTGTTTCGGCA ACGGCTCTGGCGCTATCGGATGCAGCAGAGCATGAGTCGCCGAGGGAATTGCTGGGATAACTCGGCGATGGAGCGCCTGT TCCGCAGTCTGAAGTCGGAGTGGGTCCCGTCAACGGGTTACCTGACGGCGCAGGAGGCCCAACGGGACATCAGTCATTAC TTGATGCACCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGGTTACCACCTGCGGTGGCCGAAGAAAAACTCAA CCCACTGTCCGGGATGGGTTGA Protein sequence : MVCSAFDVARSCYYVHRLRRRRVDARRVALRSQVNQLFSQSRGSAGSRSILGMLREEGVTIGRFRVRRLMRELGLVSKQP GSHAYKQATVERPDIPNRLNREFATEHPNQVWCGDITYVWAQGRWHYLAAVLDLHTRRVIGWAFSAKPDAELVIKALDMA YEQRGKPQQVLFHSDQGSQYASRLFRQRLWRYRMQQSMSRRGNCWDNSAMERLFRSLKSEWVPSTGYLTAQEAQRDISHY LMHRYNWIRPHQFNDGLPPAVAEEKLNPLSGMG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| RS04 | AAP82949.1 | putative transposase | Not tested | PAPI-2 | Protein | 2e-113 | 97 |
| l7094 | CAD33743.1 | ORF B protein | Not tested | PAI I 536 | Protein | 8e-59 | 57 |
| orfB | CAE85178.1 | OrfB protein, IS911 | Not tested | PAI V 536 | Protein | 8e-59 | 57 |
| unnamed | AAC31485.1 | L0006 | Not tested | LEE | Protein | 6e-59 | 57 |
| ECs4537 | NP_312564.1 | hypothetical protein | Not tested | LEE | Protein | 9e-59 | 57 |
| unnamed | CAI43898.1 | putative transposase | Not tested | LEE | Protein | 3e-61 | 56 |
| aec65 | AAW51748.1 | Aec65 | Not tested | AGI-3 | Protein | 3e-61 | 56 |
| Z5089 | NP_290241.1 | transposase | Not tested | LEE | Protein | 2e-61 | 56 |
| unnamed | ACU09432.1 | IS911 transposase orfB | Not tested | LEE | Protein | 2e-61 | 56 |
| ECO111_3779 | YP_003236114.1 | putative IS602 transposase OrfB | Not tested | LEE | Protein | 6e-65 | 55 |
| orfB | AGK06993.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 6e-65 | 51 |
| orfB | AGK07051.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 6e-65 | 51 |
| VC1789 | NP_231424.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 8e-65 | 51 |
| orfB | ACX47958.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 6e-65 | 51 |
| orfB | YP_001217329.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 8e-65 | 51 |
| VPI2_0008c | ACA01825.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 6e-65 | 51 |
| orfB | AGK06910.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 6e-65 | 51 |
| overlap with orfA characteristic of IS3 family members | AGK06947.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 6e-65 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PA1938 | NP_250628.1 | hypothetical protein | VFG1484 | Protein | 4e-59 | 57 |
| PA1938 | NP_250628.1 | hypothetical protein | VFG0785 | Protein | 1e-61 | 56 |
| PA1938 | NP_250628.1 | hypothetical protein | VFG1122 | Protein | 4e-65 | 51 |
