Gene Information

Name : pscL (PA1725)
Accession : NP_250416.1
Strain : Pseudomonas aeruginosa PAO1
Genome accession: NC_002516
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1317
EC number : -
Position : 1865494 - 1866138 bp
Length : 645 bp
Strand : +
Note : Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

DNA sequence : 
ATGCTTCCATTTGTTGAACTAGACGCCAGTCGCGTACGGCTGGCCCCCGGGCAGGCCCTGTTGCGCGCCCGCGACTACCA
GGACTACCTCAGCGCCAACCGCCTGGTGGAAGCGGCCCGCGAGCGTGCCGCCGAAATCGAGCGCGAGGCCCACGAGGTTT
ACCAGGAGCAGAAGCGCCTGGGCTGGGAGGCCGGACTGGAGGAGGCGCGTCTGCGCCAGGCCGGGCTGATCCAGGAAACG
CTACTGCGCTGCAATCGCTACTACCGGCAGGTCGATCGCCAGCTTGGCGAGGTGGTGCTGCAGGCGGTGCGCAAGGTGTT
GCGCCACTACGACGCTGTCGAGCTGACCCTGGCGGCCACGCGCGAGGCACTGGCATTGGTGAGCAACCAGAAGCAGGTGA
TCCTGCACGTCCAGCCGGAACAACTGGCCGCGGTGCGCGAGCAGGTCGCCCGGGTGCTCAAGGATTTCCCCGAGGTGGGC
TACCTGGAAGTGGTCGGCGATGCCCGGTTGGACCAGGGCGGTTGCATCCTGGAAACCGAGATCGGGATCATCGACGCTTC
GCTCGACAGCCAGTTGGCGGCGTTGCAGGCCGCATTGACGGAGAGCGTGGCGCGGAGCGGCGAGGAGGAAGGGGACGCCG
GTTGA

Protein sequence : 
MLPFVELDASRVRLAPGQALLRARDYQDYLSANRLVEAARERAAEIEREAHEVYQEQKRLGWEAGLEEARLRQAGLIQET
LLRCNRYYRQVDRQLGEVVLQAVRKVLRHYDAVELTLAATREALALVSNQKQVILHVQPEQLAAVREQVARVLKDFPEVG
YLEVVGDARLDQGGCILETEIGIIDASLDSQLAALQAALTESVARSGEEEGDAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAO18079.1 LscL Not tested TTSS locus Protein 4e-45 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pscL NP_250416.1 type III secretion system protein VFG0220 Protein 4e-71 100
pscL NP_250416.1 type III secretion system protein VFG0411 Protein 4e-44 59
pscL NP_250416.1 type III secretion system protein VFG0049 Protein 6e-17 42